RetrogeneDB ID: | retro_mmul_1814 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:4974677..4975613(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TFB2M | ||
Ensembl ID: | ENSMMUG00000022915 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.95 % |
Parental protein coverage: | 79. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | LAQIVCGKPNRPPHLLLECNPVNAPGPGILTEALLEAGATVVALESDKTFIPHLESLGKNLDGKLRVIHC |
...IV..K.NRPPHLLL.CN....PGPGILT.ALLE..A..VALESDKTFI.HLESLGKNLDGKL.V.HC | |
Retrocopy | MSPIV*RKQNRPPHLLLQCN----PGPGILTQALLEVDAKAVALESDKTFIAHLESLGKNLDGKLQVSHC |
Parental | DFFRIDPRSGGAIKPPAMSSEGLFKNLGVEEVPWTAGVPLKVFGMFPSRGEKRALWKLAYDLYSCSSIYK |
DFF.IDPRSGG.IKPPAM.S.GLF.NLG.E.VPWTAG.P.KV.GMFPSRGE.RA.WK.AYDLYSC.SIYK | |
Retrocopy | DFFKIDPRSGGVIKPPAMASQGLFQNLGIEAVPWTAGIP*KVTGMFPSRGEERAFWKPAYDLYSCTSIYK |
Parental | FGRIEINMFIGEKEFQKLMADPRNRGLYYVLSVVWQVACEIKVLHMEPWSSFDVYTRSGRLENTKRKEVL |
FGRIE.N.FIGEKEFQKL.AD.RN..LY.V.SV.W..ACEIKVLHMEPWSSFDVYTR.GRLEN.K..E.L | |
Retrocopy | FGRIE*NIFIGEKEFQKLTADTRNPDLYHV*SVIWHAACEIKVLHMEPWSSFDVYTRNGRLENPKHRELL |
Parental | ELLQQNLYLIQMTPRRNLFANSLTPMNYNIFFHLLKHCFGKRSATVIDHLRSLTPLDAADILMQIGKKED |
ELLQ.NLYLI.MTP..NLF...LT...YNIFFH.LKHCF..RSA.VIDHLRSLTPLDA.DIL.QIGKKE. | |
Retrocopy | ELLQHNLYLIRMTPCGNLFTKNLTLIHYNIFFHMLKHCFVRRSANVIDHLRSLTPLDAMDILPQIGKKEE |
Parental | EKVVNMYPEDFKRLFETIESSEDCTYKWLYDDTLED |
EK..N.YP..FK.LFETIE.S.DC.YKWLYD.TLED | |
Retrocopy | EKITNVYPQNFKKLFETIECSKDCAYKWLYDETLED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 9 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 8 .49 RPM |
SRP007412_cerebellum | 0 .77 RPM | 9 .56 RPM |
SRP007412_heart | 0 .00 RPM | 9 .42 RPM |
SRP007412_kidney | 0 .12 RPM | 23 .12 RPM |
SRP007412_liver | 0 .20 RPM | 11 .80 RPM |
SRP007412_testis | 0 .04 RPM | 4 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3548 |
Pan troglodytes | retro_ptro_2412 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000013225 | 1 retrocopy | |
Homo sapiens | ENSG00000162851 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001095 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003923 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022915 | 1 retrocopy |
retro_mmul_1814 ,
|
Nomascus leucogenys | ENSNLEG00000004146 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013727 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007823 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000000046 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002188 | 1 retrocopy |