RetrogeneDB ID: retro_mluc_1315

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429817:3655822..3657015(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012066
• Aliases: None
• Description: None

Sequence

>retro_mluc_1315
AAAAGTGATGAAGAACTGGCAAGAAAGCTAAGCAATAATATTAACAACTTCTGTGAGAAAAAAGTTTGGCTTCTCCCATG
AATTCCAGAAAATCTGATCCAGTCACAAGGAAGTTGCAAAAGAAAAGTAAAAATAAATAAACAAATACTGGAGATATTCA
GAAGTATTTATCACCTAAATCTCAATTTGGGTCAGCATCACAGTCTGAAGTTGTACAAGAAGGCAAACAAAAGTCCATGT
CCAAGGAAACTGATAGCAGCAATGTAAAGAGCCCTATGTGGCAAGACACAGAAGTGGAGGAAGATATGCCAAAACTTTCT
CCGCAAATATGCCTTAAAATTCAAGAACAAGGTGCAAAGTCTTCAATAGAGTCACCTATGCCTCAGTTATGTGCCAGTGA
TACAGAATGGTGCCTTGAAGGAGAAGTCAAAATGAGACCAAACAATCATGATAAAGAATTATGTGCCATAAATCCTGAGA
GACCTGAAGCCAGAGTACCCTACCCTAGAGAAGCTGCAGTTAAGCCTTGTGACGAAACAGAGAGTGGGTGTGCTCTATCA
TATATGACCCAGATAATTGGAAATAACACAGTTGAGACAGAAAATGAAGAGTCTTGCCTACTGATCAGTGAAGAAGGTAT
TTGCAAAAGAAAAAATCAGGAGTCTTCTTTTGAAGCAGTCAGGGATCCATGCTTTTCTGCAAAAAGAAGGAAAATGTCCT
CTGAATCTTCCTCAGACCAAGATGAAACAGAAACCAGCTTTACTCAAAAACTGTTAGATTTGGAATATCTACTTTTTGAG
AGACATAAGCAAGAACAGGACAGGTTATTAGCACTACAGATTCAAAAAGAGGTGGACAAAGAACAAATGAAGCCAAACTG
ACAGAAAGGATCCCCAGATGAATATCATTTACATTCTACGCCCTCACCTCCAGACAAATTGCTAAATGGACAGAGGAAGA
AATCCAAAAATAGAAATGCAAAAGGACAAGCTGATACAGAACATCCAAAACCTCAAAGAGGCCCAAAAACTGAAAATTGC
TAACCTTCTTTTAAGATCCAGTTGAGACATTCAGTTAATGTTAATGGAAGAAAGATGCCAAATTCTGCTAGATATCATTG
TAATGTATCTAAAAGTGTTCGTTCCCTACAGCCTAGTAAGTCACAGAAAAGTATTTTTCAGATGTTTCAGAGA

Alignment

ORF - retro_mluc_1315 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.75 %
• Parental protein coverage: 69.88 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KRDEELARKLSININNFCEKKV-LASPINSRKSDPVTSKLQKKSKNKQTNTGDIQKYLSPKSQFGSASQS
          K.DEELARKLS.NINNFCEKKV.LASP.NSRKSDPVT.KLQKKSKNK.TNTGDIQKYLSPKSQFGSASQS
Retrocopy KSDEELARKLSNNINNFCEKKV<LASPMNSRKSDPVTRKLQKKSKNK*TNTGDIQKYLSPKSQFGSASQS

Parental  EVVQEGKQKSMSKETDSSNVKSPMWQDTEVEEDMPTLSPQICLEIQEQGAKSSIESTMPQLCASDTEWCL
          EVVQEGKQKSMSKETDSSNVKSPMWQDTEVEEDMP.LSPQICL.IQEQGAKSSIES.MPQLCASDTEWCL
Retrocopy EVVQEGKQKSMSKETDSSNVKSPMWQDTEVEEDMPKLSPQICLKIQEQGAKSSIESPMPQLCASDTEWCL

Parental  EGEVKMRPNNHEKELCAINPERPEARVPHPREAAVKPCGETKSGCALSYMTQIIGNNTVETENEESCLLI
          EGEVKMRPNNH.KELCAINPERPEARVP.PREAAVKPC.ET.SGCALSYMTQIIGNNTVETENEESCLLI
Retrocopy EGEVKMRPNNHDKELCAINPERPEARVPYPREAAVKPCDETESGCALSYMTQIIGNNTVETENEESCLLI

Parental  SEEGICKRKNQESSFEAVRDPCFSAKRRKMSSESSSDQEETETSFTQKLLDLEHLLFERRKQEEQDRLLA
          SEEGICKRKNQESSFEAVRDPCFSAKRRKMSSESSSDQ.ETETSFTQKLLDLE.LLFER.KQ.EQDRLLA
Retrocopy SEEGICKRKNQESSFEAVRDPCFSAKRRKMSSESSSDQDETETSFTQKLLDLEYLLFERHKQ-EQDRLLA

Parental  LQIQKEVDKEQMKPNRQKGSPDEYHLRSTPSPPDKLLNGQRKKSKNRNVKGQAGTEHPKPQRGPKTENCQ
          LQIQKEVDKEQMKPN.QKGSPDEYHL.STPSPPDKLLNGQRKKSKNRN.KGQA.TEHPKPQRGPKTENC.
Retrocopy LQIQKEVDKEQMKPN*QKGSPDEYHLHSTPSPPDKLLNGQRKKSKNRNAKGQADTEHPKPQRGPKTENC*

Parental  PSFKTKLRHSVNVNGRKMPNSARDHCNVSKSVRSLQPSKSQKSIFQMFQR
          PSFK..LRHSVNVNGRKMPNSAR.HCNVSKSVRSLQPSKSQKSIFQMFQR
Retrocopy PSFKIQLRHSVNVNGRKMPNSARYHCNVSKSVRSLQPSKSQKSIFQMFQR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1315 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013317	1 retrocopy	retro_btau_1816,
Felis catus	ENSFCAG00000022131	1 retrocopy	retro_fcat_1967,
Loxodonta africana	ENSLAFG00000010864	1 retrocopy	retro_lafr_1181,
Myotis lucifugus	ENSMLUG00000012066	1 retrocopy	retro_mluc_1315 ,
Ictidomys tridecemlineatus	ENSSTOG00000021829	1 retrocopy	retro_itri_683,