RetrogeneDB ID: retro_mluc_1528

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429856:983003..983630(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COPS5
• Ensembl ID: ENSMLUG00000011697
• Aliases: None
• Description: None

Sequence

>retro_mluc_1528
CAGGTTGGCCACCTTGAAAATGCAATTGGCTGTTATCATAGCCACCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATGT
TAGTGCTCAGATGCTCAATCAGCAGTTCCAGGAGCCATTCGTAGCAGTGGTGATTGATCCAACAAGAACAATATCTGCAG
GGAAAGTGAATCTTGGAGCCTTTAGGACATACCCAAAGGGATACAAACCTCCTGATGAAGGCCCTTCTGAGTACCAGACT
ATCCCACTGAATAAAATAGAAGATTTTGGTGTACACTGCAAACAATATTATGCCTTAGAAGTATCATATTTCAAGTCCTC
CTTGGATGGCAAATTGCTTGAGCTTTTGTGGAATAAATACTGGGTGAATACGCTGAGTTCCTCTAGCTTGCTTACCAATG
CAGACTATACCACCGGCCAGGTCTTTGATTTGTCTGAAAAATTAGAACAGTCAGAAGCTCAGCTGGGATGAGGAAGTTTC
ATGTTGGGTTTAGAAACACACGACCGAAAGTCAGAAGACAAACTTGCCAAAGCTACTCGAGACAGCTGTAAAACGACCAT
AGAAGCTATCCATGGATTGATGTCTCAGGTTATTAAGGATAAACTGTTTAATCAAATTAACGTGTCT

Alignment

ORF - retro_mluc_1528 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.61 %
• Parental protein coverage: 62.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKP
          QVG.LENAIG.YHSHPGYGCWLSGIDVS.QMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKP
Retrocopy QVGHLENAIGCYHSHPGYGCWLSGIDVSAQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKP

Parental  PDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQ
          PDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLD.KLLELLWNKYWVNTLSSSSLLTNADYTTGQ
Retrocopy PDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDGKLLELLWNKYWVNTLSSSSLLTNADYTTGQ

Parental  VFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVS
          VFDLSEKLEQSEAQLG.GSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVS
Retrocopy VFDLSEKLEQSEAQLG*GSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1528 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002028	1 retrocopy	retro_chof_556,
Callithrix jacchus	ENSCJAG00000004632	1 retrocopy	retro_cjac_2454,
Myotis lucifugus	ENSMLUG00000011697	1 retrocopy	retro_mluc_1528 ,
Monodelphis domestica	ENSMODG00000007838	1 retrocopy	retro_mdom_1460,
Mustela putorius furo	ENSMPUG00000010175	1 retrocopy	retro_mputfur_397,
Tupaia belangeri	ENSTBEG00000008440	7 retrocopies	retro_tbel_1083, retro_tbel_1833, retro_tbel_1853, retro_tbel_2528, retro_tbel_3147, retro_tbel_3896, retro_tbel_3914,