RetrogeneDB ID: | retro_cjac_2454 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:92232804..92233434(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COPS5 | ||
Ensembl ID: | ENSCJAG00000004632 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.89 % |
Parental protein coverage: | 62.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYF-KYCKISALALLKMVMHA |
MAASGSGM.QKTWELA.NM.EAQSI.EIYKYDKK.QQEILAAKPW...H.YF.KYCKISALALLKMVMHA | |
Retrocopy | MAASGSGMVQKTWELAKNMHEAQSINEIYKYDKK*QQEILAAKPWVSNHYYF>KYCKISALALLKMVMHA |
Parental | RSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHS |
RSGGN.EV.G.M.GKVDG.T.I.M..F.L.VEGTET..NA.A.AYEY.A.YIENA.QVG.L.NA.GWY.. | |
Retrocopy | RSGGNSEVVGWMPGKVDGKTTIVMGCFTLLVEGTET*ENA*AVAYEYTATYIENANQVGCLNNAVGWYYR |
Parental | HPGYGCWLSGI-DVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPL |
HPG.GCWLSGI..VSTQ.LN.QF..PF.AV.IDPTRT.SAGKVNL.AFR.YPKG.KPP..GPSEYQTIPL | |
Retrocopy | HPGHGCWLSGI<HVSTQLLNKQFRKPFTAVAIDPTRTVSAGKVNLDAFRAYPKGCKPPNKGPSEYQTIPL |
Parental | NK |
.K | |
Retrocopy | SK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 10 .41 RPM |
SRP051959_heart | 0 .00 RPM | 14 .10 RPM |
SRP051959_kidney | 0 .00 RPM | 14 .40 RPM |
SRP051959_liver | 0 .00 RPM | 16 .59 RPM |
SRP051959_lung | 0 .00 RPM | 11 .18 RPM |
SRP051959_lymph_node | 0 .00 RPM | 10 .94 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 25 .73 RPM |
SRP051959_spleen | 0 .00 RPM | 11 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3634 |
Pan troglodytes | retro_ptro_2457 |
Gorilla gorilla | retro_ggor_2451 |
Pongo abelii | retro_pabe_2980 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002028 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004632 | 1 retrocopy |
retro_cjac_2454 ,
|
Homo sapiens | ENSG00000121022 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016289 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011042 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011697 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007838 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010175 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010914 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018648 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020317 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008440 | 7 retrocopies |