RetrogeneDB ID: retro_mputfur_397

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896907.1:5816782..5817370(+)
• Located in intron of: ENSMPUG00000012104

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000010175
• Aliases: None
• Description: None

Sequence

>retro_mputfur_397
GTGGTGGCGTCTGGGAGAGCTATGGCTCAGAAAACCTGGGAACTGGCCAACAACTTGCTGGAAGCCCAGAGCATCGATGA
AATCTACAAATACGACAAGAAACAGCAGCAAGAAATAATAGGCAGCGAAGCCCTGGGCTAAGGATCACCATTACTTTAAG
TACTGTAAAATCTCAGCATTGGCTCTACTGAAAATGGTGATGCATGGCAGATCGGGAGGCAACTTAGAAGTGTTGGGCTT
AATGCTGGGAAGGGTGAATGGTGAAACCATGATCATTATGGACAGTTTGGCTTGCTTGTAGAGGGCACTGAAACCCGAGT
AAATGCTCAGGCTGCTGCATATGAGTATGTGGCTGTGTATATAGAAAACACCAAACAGGTCGGCTGCCTTGAAAATGCAA
TTGGCGGGTATCGCAGCCATCCTGGCTATGGCTGCTGGCTTTCTGGGATTGATATTACTGCTCAGATGCTCAGTCAGCAG
TTCCGGGAACCATTCGTAGCAGTAATAATTGACCCAACAAGAACAGTATCAGCAGGGAAAGTGAATCTTGGAGCCTTTAG
GACATACCCAAAGGGCTACAAACCCTCT

Alignment

ORF - retro_mputfur_397 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.33 %
• Parental protein coverage: 59.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEIL-AAKPWTKDHHYFKYCKISALALLKMVMHA
          ..ASG..MAQKTWELANN..EAQSIDEIYKYDKKQQQEI..AAKPW.KDHHYFKYCKISALALLKMVMH.
Retrocopy VVASGRAMAQKTWELANNLLEAQSIDEIYKYDKKQQQEII>AAKPWAKDHHYFKYCKISALALLKMVMHG

Parental  RSGGNLEVMGLMLGKVDGETMIIMDS-FALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYH
          RSGGNLEV.GLMLG.V.GETMIIMDS.F.L.VEGTETRVNAQAAAYEY.A.YIEN.KQVG.LENAIG.Y.
Retrocopy RSGGNLEVLGLMLGRVNGETMIIMDS<FGLLVEGTETRVNAQAAAYEYVAVYIENTKQVGCLENAIGGYR

Parental  SHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKSFFPA
          SHPGYGCWLSGID...QML.QQF.EPFVAV.IDPTRT.SAGKVNLGAFRTYPK...P.
Retrocopy SHPGYGCWLSGIDITAQMLSQQFREPFVAVIIDPTRTVSAGKVNLGAFRTYPKGYKPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_397 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_397 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002028	1 retrocopy	retro_chof_556,
Callithrix jacchus	ENSCJAG00000004632	1 retrocopy	retro_cjac_2454,
Homo sapiens	ENSG00000121022	1 retrocopy	retro_hsap_3634,
Gorilla gorilla	ENSGGOG00000016289	1 retrocopy	retro_ggor_2451,
Microcebus murinus	ENSMICG00000011042	1 retrocopy	retro_mmur_834,
Myotis lucifugus	ENSMLUG00000011697	1 retrocopy	retro_mluc_1528,
Monodelphis domestica	ENSMODG00000007838	1 retrocopy	retro_mdom_1460,
Mustela putorius furo	ENSMPUG00000010175	1 retrocopy	retro_mputfur_397 ,
Nomascus leucogenys	ENSNLEG00000010914	1 retrocopy	retro_nleu_815,
Pongo abelii	ENSPPYG00000018648	1 retrocopy	retro_pabe_2980,
Pan troglodytes	ENSPTRG00000020317	2 retrocopies	retro_ptro_2457, retro_ptro_638,
Tupaia belangeri	ENSTBEG00000008440	7 retrocopies	retro_tbel_1083, retro_tbel_1833, retro_tbel_1853, retro_tbel_2528, retro_tbel_3147, retro_tbel_3896, retro_tbel_3914,