RetrogeneDB ID: retro_mluc_155

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430078:1318953..1320375(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026606
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000007462
• Aliases: None
• Description: None

Sequence

>retro_mluc_155
ATGGTGCAGTATGACTTTGCTCCAGCCTGGCTTAATTTTCCTACTCCACCATCATCAACAAAGTCCTCATTGAATTTTGA
GAAGCATTCTGAACACTTTTCATGGACAGAGAATCATTATGCTGTGAGTCGTCGACGACACAACTTTTCAGACAGTTTTG
ACTCTGGTATTGGACGTCCCAGTGGAGGTAACTTTGGAAGGAAAGAAAAAAATGGATGGCGTACGCATGGGAGAAATGGC
ACTGAAAACAGAAATCATCTCGGGGGATACCATGGCGGGAGTGCCCGTTCTCGGAGCAGCATTTTCCATTCTGGAAAAGG
CCAAGGACTGCACAACAACAACACCCCTGACAGTGAGCCAGGGAGGAAGGAAGACAGGAGAGAACGCAGACAGTTTGAGG
TTGAGGATTTTCCATCTTTAAATCCTGAATATGAGAGAGAACCAAATCAAAATAAGTCTTTAGCTGCAGGCGTATGGGAG
TACCCTCCGAACCCCACATCTAGAGCTCCCAGGATGCTGGTCATTAAGAAAGGCACTGACAAGGACTTGCAGCTGTCCGA
GTTCCCCGCTGGAGGGGCTCCCCTGTCCCAGCCAGTGAAGAGCGGGACTGGCCCCAGTGTTTATAAAGGCCTGGTCCCTA
AGCCTGCTGCTCCGCCCACAAAACCTACACAATGGAAAAGCCAAACTAAAGAAAATAAAGTTGGGACTTCTTTCTCTCAT
GAGTCTACATATGGTGTTGGCAACTTCCATTCTTTTAAATCAACAGCCAAGAATTTTAGTCCATCAACAACGACAGGGAA
AGAGTGTAATCGCTCAAATTCCTCTTCACCTGTTGACAAACTTAATCAGCAGCCTCATCTAACCAAGCTGACACGAATGC
GCACTGATAAGAAGAGCGAGTTTCTGAAGGCGTTAAAACGGGACGGAGTGGAGGAGGAGCATGAGGATGAAAGCCATGCT
GGCTCCGAGAAGGATGAAGACTCATTTAATTTGCATAACAGCAATAGTACTCACCGAGACAGAGATATAAACGGGAACTT
TGACGAAAATGAAATTCCACAAGAGAATGGCAATGCCTCGGTTATTTCCCAGCAGATCATTCGGTCCTCAGCCTTCCCAC
CGACCCATGTTCTTTCAAGTTCCCTTGAGGCAGAATACAGGTTGTTGAAGGAGATGGGCTGGCAAGAAGACAGTGAAAAC
GATGAAACGTGTGCTCCCTTAACTGAGGAGGAAATGAGAGAATTCCAAGTTATTAGCAAACAGTTGCAGAAGAATGGTCT
GAGGAAAAACGGTATTTTGAAAAATGGCCTGATCTGTGACTTCAAGTTTGGACCCTGGAGAAGCAGCACTTTCCACCCCA
CGATTGAGAACGACGACACGGAGACGAGCAGTAGCGACACGTCCGATGACGACGACGTGTGA

Alignment

ORF - retro_mluc_155 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.45 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSEHFSWTENRYDVSRRRHNSSDGFDSGIGRPSGGNFGRKEK
          M.Q.DFAPAWLNFPTPPSSTKSSLNFEKHSEHFSWTEN.Y.VSRRRHN.SD.FDSGIGRPSGGNFGRKEK
Retrocopy MVQYDFAPAWLNFPTPPSSTKSSLNFEKHSEHFSWTENHYAVSRRRHNFSDSFDSGIGRPSGGNFGRKEK

Parental  NGWRTHGRNGTENINHRGGYHGGSARSRSSIFHSGKGQGLHDN-TPDSEPGRKEDRRERKQFEAEDFPSL
          NGWRTHGRNGTEN.NH.GGYHGGSARSRSSIFHSGKGQGLH.N.TPDSEPGRKEDRRER.QFE.EDFPSL
Retrocopy NGWRTHGRNGTENRNHLGGYHGGSARSRSSIFHSGKGQGLHNNNTPDSEPGRKEDRRERRQFEVEDFPSL

Parental  NPEYEREPNQNKSLAAGVWEYPPNPTSRAPRMLVIKKGTAKDLQLSGFPAGGAPPSQPVKNGTGPSVYKG
          NPEYEREPNQNKSLAAGVWEYPPNPTSRAPRMLVIKKGT.KDLQLS.FPAGGAP.SQPVK.GTGPSVYKG
Retrocopy NPEYEREPNQNKSLAAGVWEYPPNPTSRAPRMLVIKKGTDKDLQLSEFPAGGAPLSQPVKSGTGPSVYKG

Parental  LVPKPAAPPTKPTQWKSQTKENKVGTSFSHESTYGVGNFNAFKSTAKNFSPSTTTVKECNRSNSSSPVDK
          LVPKPAAPPTKPTQWKSQTKENKVGTSFSHESTYGVGNF..FKSTAKNFSPSTTT.KECNRSNSSSPVDK
Retrocopy LVPKPAAPPTKPTQWKSQTKENKVGTSFSHESTYGVGNFHSFKSTAKNFSPSTTTGKECNRSNSSSPVDK

Parental  LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDGSHAGSEKDEDSFNLHNSNSTHQDRDINRNFDEN
          LNQQP.LTKLTRMRTDKKSEFLKALKRD.VEEEHED.SHAGSEKDEDSFNLHNSNSTH.DRDIN.NFDEN
Retrocopy LNQQPHLTKLTRMRTDKKSEFLKALKRDGVEEEHEDESHAGSEKDEDSFNLHNSNSTHRDRDINGNFDEN

Parental  EIPQENGNASVLSPQIIRSSAFPPTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISE
          EIPQENGNASV.S.QIIRSSAFPPT.VLSSSLEAE.RLLKEMGWQEDSENDETCAPLTE.EMREFQVIS.
Retrocopy EIPQENGNASVISQQIIRSSAFPPTHVLSSSLEAEYRLLKEMGWQEDSENDETCAPLTEEEMREFQVISK

Parental  QLQKNGLRKNGILKNGLICDFKFGPWKSSTFHPTIENDDTETSSSDTSDDDDV
          QLQKNGLRKNGILKNGLICDFKFGPW.SSTFHPTIENDDTETSSSDTSDDDDV
Retrocopy QLQKNGLRKNGILKNGLICDFKFGPWRSSTFHPTIENDDTETSSSDTSDDDDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_155 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015104	1 retrocopy	retro_cjac_3961,
Microcebus murinus	ENSMICG00000014678	1 retrocopy	retro_mmur_1198,
Myotis lucifugus	ENSMLUG00000007462	1 retrocopy	retro_mluc_155 ,
Myotis lucifugus	ENSMLUG00000012432	2 retrocopies	retro_mluc_211, retro_mluc_834,
Monodelphis domestica	ENSMODG00000019540	1 retrocopy	retro_mdom_283,
Otolemur garnettii	ENSOGAG00000013991	1 retrocopy	retro_ogar_1077,
Ictidomys tridecemlineatus	ENSSTOG00000003057	1 retrocopy	retro_itri_1678,