RetrogeneDB ID: retro_mluc_211

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429934:981773..983195(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003778
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012432
• Aliases: None
• Description: None

Sequence

>retro_mluc_211
ATGGCGCAGCATGACTTTGTTCCTGCTTGGCTACATTTTTCAACACCACAGGCAGTGAAGTCACCTACAGCCACCTTTGA
AAAACACGGAGAGCACCTACCCCGAGGAGATGGTCGATTTGGAGTAAGCCGTCATCGTCGACATAATTTCTCTGATGGCT
TTTTTAACAATGGACCTCTACGAACTACAGATTCCTGGCACCAGCCCTTCCTGTTTCCCCATGATTCTGTGGACTCAAGT
GTCTCTAAGGGAGCATATACTGGAATCACAGGAAACCTATCTGGTTGGCATGGCTCTTCCCGTGGTCATGATGGCATGAG
CCAGCGTAGTTGGGGTGGCGCAGGAAACCATCACCACTGGAATGGCAGCTTTCACTCCAGGAAAGGCTGTGCCTTTCAGG
AAAAGCCACCTGCAGAGATTAGGGAAGAAAAAAAAGAAGACGAGGTGGAAAAGTTGCAGTTTGAAGAGGAAGACTTCCCT
TTGAATCCAGAAGCTGGCAAACAGAATCAGCCATGCAGACCTATTGGGACCCCTTCTGGAGTGTGGGAAAACCCACCTGG
TGCCAAACAAACCTCCAAAATGCTAGTTATCAAAAAAGTTTCCAAAGAAGATCCTGCTGCTGCCTTCTCTGCTGCATTCA
CCTCAACAGGATCTCACTATGCAAATGGGAACAAATTGTCCAACATGGTTCCAAGTGTCTATAAGAACCTGGTTCCTAAG
CCTGCACCACCTCCCTCCAAGCCCAGTGCATGGAAAGCTAACAGAATGGAACACAAATCAGGATCCCTTTCCACTAGCCA
GGAGTCTGCTTTTACCAGTCCAATCTCTGGTACCAAACCAGTAGTACTGGCTGGTGGTGCAGTTTTAAGCTCTCCCAAAA
AGAGTCCCTCCAGCACCACTCCTCCCATTGAGATCAGCTCCTCTCATCTGACCAAGTTGACCCGCCGAACCACCGACAGG
AAAAGCGAGTTTCTGAAGACTTTGAAGGATGACCGGAATGGAGACTTCTCAGAGAACAGAGACTGTGACAAGCTGGAGGA
TTTGGAGGACAACAGCACACCTGAACCAAAGGAAAATGGGGAGGAAAGCTGTCATCAGAATGGTCTCCCTCTCCCTGTAG
AGGAGGAAGGGGAGGTCCTCTCACACTCACTGGAAGCAGAGCACAGGTTATTGAAAGCAATGGGATGGCAGGAGTATCCT
GGAAATGATGAGAATTACCTTCCCCTCACAGAGGATGAGCTTAAAGAGTCCCATATGAAGACAGAGCAGCTGAGAAGAAA
TGGCTTTGGGAAGAATGGCTTCTTGCAAAGCCGCACTTCTAGCCTGTTCTCCCCTTGGAGAAGCACGTGCAAAGCAGAGT
TTGAGGATTCAGACACAGAAACCAGTAGCAGTGAAACATCAGATGACGATGCCTGGAAGTAG

Alignment

ORF - retro_mluc_211 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.53 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQHDFVPAWLNFSTPQAVKSPTATFEKHGEHLPRGDGRFGVSR-RRHNSSDGFFNNGPLRTTGDSWHQP
          MAQHDFVPAWL.FSTPQAVKSPTATFEKHGEHLPRGDGRFGVSR.RRHN.SDGFFNNGPLRTT.DSWHQP
Retrocopy MAQHDFVPAWLHFSTPQAVKSPTATFEKHGEHLPRGDGRFGVSRHRRHNFSDGFFNNGPLRTT-DSWHQP

Parental  SLFRHDSVDSGVSKGAYAGITGNLSGWHGSSRGHDGMSQRSGGGTGNHRHWNGSFHSRKGCAFQEKPPAE
          .LF.HDSVDS.VSKGAY.GITGNLSGWHGSSRGHDGMSQRS.GG.GNH.HWNGSFHSRKGCAFQEKPPAE
Retrocopy FLFPHDSVDSSVSKGAYTGITGNLSGWHGSSRGHDGMSQRSWGGAGNHHHWNGSFHSRKGCAFQEKPPAE

Parental  IREERKEEKVEKLQFEEEDFPSLNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAAT
          IREE.KE..VEKLQFEEEDFP.LNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAA.
Retrocopy IREEKKEDEVEKLQFEEEDFP-LNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAAA

Parental  FSAAFTSPGSHYANGNKSSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSSSRESAFTSPISVT
          FSAAFTS.GSHYANGNK.SNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLS.S.ESAFTSPIS.T
Retrocopy FSAAFTSTGSHYANGNKLSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSTSQESAFTSPISGT

Parental  KPVVLAGGAVLSSPKESPSSTTPPIEISSSRLTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL
          KPVVLAGGAVLSSPK.SPSSTTPPIEISSS.LTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL
Retrocopy KPVVLAGGAVLSSPKKSPSSTTPPIEISSSHLTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL

Parental  EDNSTPEPKENGEEGCHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYPENDENYLPLTEDELKEFH
          EDNSTPEPKENGEE.CHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYP.NDENYLPLTEDELKE.H
Retrocopy EDNSTPEPKENGEESCHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYPGNDENYLPLTEDELKESH

Parental  MKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK
          MKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK
Retrocopy MKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_211 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010454	1 retrocopy	retro_chof_53,
Microcebus murinus	ENSMICG00000008449	1 retrocopy	retro_mmur_164,
Myotis lucifugus	ENSMLUG00000007462	1 retrocopy	retro_mluc_155,
Myotis lucifugus	ENSMLUG00000012432	2 retrocopies	retro_mluc_211 , retro_mluc_834,
Mus musculus	ENSMUSG00000034042	2 retrocopies	retro_mmus_1391, retro_mmus_405,
Oryctolagus cuniculus	ENSOCUG00000017939	1 retrocopy	retro_ocun_427,
Otolemur garnettii	ENSOGAG00000004134	1 retrocopy	retro_ogar_1859,
Ochotona princeps	ENSOPRG00000001584	1 retrocopy	retro_opri_928,
Rattus norvegicus	ENSRNOG00000037595	1 retrocopy	retro_rnor_390,
Sorex araneus	ENSSARG00000004852	1 retrocopy	retro_sara_242,
Ictidomys tridecemlineatus	ENSSTOG00000013491	1 retrocopy	retro_itri_243,
Tursiops truncatus	ENSTTRG00000012202	1 retrocopy	retro_ttru_1355,