RetrogeneDB ID:

retro_mluc_211

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429934:981773..983195(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000003778
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000012432
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_211
ATGGCGCAGCATGACTTTGTTCCTGCTTGGCTACATTTTTCAACACCACAGGCAGTGAAGTCACCTACAGCCACCTTTGA
AAAACACGGAGAGCACCTACCCCGAGGAGATGGTCGATTTGGAGTAAGCCGTCATCGTCGACATAATTTCTCTGATGGCT
TTTTTAACAATGGACCTCTACGAACTACAGATTCCTGGCACCAGCCCTTCCTGTTTCCCCATGATTCTGTGGACTCAAGT
GTCTCTAAGGGAGCATATACTGGAATCACAGGAAACCTATCTGGTTGGCATGGCTCTTCCCGTGGTCATGATGGCATGAG
CCAGCGTAGTTGGGGTGGCGCAGGAAACCATCACCACTGGAATGGCAGCTTTCACTCCAGGAAAGGCTGTGCCTTTCAGG
AAAAGCCACCTGCAGAGATTAGGGAAGAAAAAAAAGAAGACGAGGTGGAAAAGTTGCAGTTTGAAGAGGAAGACTTCCCT
TTGAATCCAGAAGCTGGCAAACAGAATCAGCCATGCAGACCTATTGGGACCCCTTCTGGAGTGTGGGAAAACCCACCTGG
TGCCAAACAAACCTCCAAAATGCTAGTTATCAAAAAAGTTTCCAAAGAAGATCCTGCTGCTGCCTTCTCTGCTGCATTCA
CCTCAACAGGATCTCACTATGCAAATGGGAACAAATTGTCCAACATGGTTCCAAGTGTCTATAAGAACCTGGTTCCTAAG
CCTGCACCACCTCCCTCCAAGCCCAGTGCATGGAAAGCTAACAGAATGGAACACAAATCAGGATCCCTTTCCACTAGCCA
GGAGTCTGCTTTTACCAGTCCAATCTCTGGTACCAAACCAGTAGTACTGGCTGGTGGTGCAGTTTTAAGCTCTCCCAAAA
AGAGTCCCTCCAGCACCACTCCTCCCATTGAGATCAGCTCCTCTCATCTGACCAAGTTGACCCGCCGAACCACCGACAGG
AAAAGCGAGTTTCTGAAGACTTTGAAGGATGACCGGAATGGAGACTTCTCAGAGAACAGAGACTGTGACAAGCTGGAGGA
TTTGGAGGACAACAGCACACCTGAACCAAAGGAAAATGGGGAGGAAAGCTGTCATCAGAATGGTCTCCCTCTCCCTGTAG
AGGAGGAAGGGGAGGTCCTCTCACACTCACTGGAAGCAGAGCACAGGTTATTGAAAGCAATGGGATGGCAGGAGTATCCT
GGAAATGATGAGAATTACCTTCCCCTCACAGAGGATGAGCTTAAAGAGTCCCATATGAAGACAGAGCAGCTGAGAAGAAA
TGGCTTTGGGAAGAATGGCTTCTTGCAAAGCCGCACTTCTAGCCTGTTCTCCCCTTGGAGAAGCACGTGCAAAGCAGAGT
TTGAGGATTCAGACACAGAAACCAGTAGCAGTGAAACATCAGATGACGATGCCTGGAAGTAG

ORF - retro_mluc_211 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.53 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAQHDFVPAWLNFSTPQAVKSPTATFEKHGEHLPRGDGRFGVSR-RRHNSSDGFFNNGPLRTTGDSWHQP
MAQHDFVPAWL.FSTPQAVKSPTATFEKHGEHLPRGDGRFGVSR.RRHN.SDGFFNNGPLRTT.DSWHQP
RetrocopyMAQHDFVPAWLHFSTPQAVKSPTATFEKHGEHLPRGDGRFGVSRHRRHNFSDGFFNNGPLRTT-DSWHQP
ParentalSLFRHDSVDSGVSKGAYAGITGNLSGWHGSSRGHDGMSQRSGGGTGNHRHWNGSFHSRKGCAFQEKPPAE
.LF.HDSVDS.VSKGAY.GITGNLSGWHGSSRGHDGMSQRS.GG.GNH.HWNGSFHSRKGCAFQEKPPAE
RetrocopyFLFPHDSVDSSVSKGAYTGITGNLSGWHGSSRGHDGMSQRSWGGAGNHHHWNGSFHSRKGCAFQEKPPAE
ParentalIREERKEEKVEKLQFEEEDFPSLNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAAT
IREE.KE..VEKLQFEEEDFP.LNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAA.
RetrocopyIREEKKEDEVEKLQFEEEDFP-LNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAAA
ParentalFSAAFTSPGSHYANGNKSSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSSSRESAFTSPISVT
FSAAFTS.GSHYANGNK.SNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLS.S.ESAFTSPIS.T
RetrocopyFSAAFTSTGSHYANGNKLSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSTSQESAFTSPISGT
ParentalKPVVLAGGAVLSSPKESPSSTTPPIEISSSRLTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL
KPVVLAGGAVLSSPK.SPSSTTPPIEISSS.LTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL
RetrocopyKPVVLAGGAVLSSPKKSPSSTTPPIEISSSHLTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL
ParentalEDNSTPEPKENGEEGCHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYPENDENYLPLTEDELKEFH
EDNSTPEPKENGEE.CHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYP.NDENYLPLTEDELKE.H
RetrocopyEDNSTPEPKENGEESCHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYPGNDENYLPLTEDELKESH
ParentalMKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK
MKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK
RetrocopyMKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_211 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000104541 retrocopy
Microcebus murinus ENSMICG000000084491 retrocopy
Myotis lucifugus ENSMLUG000000074621 retrocopy
Myotis lucifugus ENSMLUG00000012432 2 retrocopies
retro_mluc_211 , retro_mluc_834,
Mus musculus ENSMUSG000000340422 retrocopies
Oryctolagus cuniculus ENSOCUG000000179391 retrocopy
Otolemur garnettii ENSOGAG000000041341 retrocopy
Ochotona princeps ENSOPRG000000015841 retrocopy
Rattus norvegicus ENSRNOG000000375951 retrocopy
Sorex araneus ENSSARG000000048521 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000134911 retrocopy
Tursiops truncatus ENSTTRG000000122021 retrocopy



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