RetrogeneDB ID: retro_mluc_1621

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429873:4205254..4205836(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010437
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: HCCS
• Ensembl ID: ENSMLUG00000003569
• Aliases: None
• Description: None

Sequence

>retro_mluc_1621
CAAGCAGAACCCCTAGATCCTTCTAATCTGATGCCACCACCTAATCAGACACCGGCCCCTGACCAGCCATTTGCACTCTC
CACTGTGAGGGAGGAGTCCTCCATTCCGAGAGCAGATTCCGAGAAAAAGTGGGTTTACCCTTCCGAGCAGATGTTCTGGA
ACGCGATGCTAAAGAAAGGGTGGAAGTGGACGGATGATGACATCAGTCAGAAGGACATGTACAACATCATCAAGATCCAC
AACCAGAACAACGAGCAGGCGTGGAAGGAGATTTTGAAGTGGGAAGCCCTTCATGCTGCGGAGTGTCCCTGTGGTCCCTC
GTTGGTCCGGTTCGGAGGGAAAGCCAAGGAGTACTTTCCACGGGCAAGAATCCGCTCCTGGATGGGGTACGAGTTGCCTT
TCGACAGGCACGACTGGATTGTCAACCGCTGTGGCAAGGAAGTCAGATACGTCATTGACTACTACGATGATGGCGAGGTC
AACCAGGAGTACCAGTTCACCATCCTGGACATGCCGCCCGCCTTCGACTCGCTGTCCGCGGTGTGGGACAGGATGAAGGT
CGCCTGGTGGCGCTGGACCTCA

Alignment

ORF - retro_mluc_1621 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.33 %
• Parental protein coverage: 71.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ERQNLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVYPSEQMFWNAMLKKGWKWKDDDISQ
          ....LDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVYPSEQMFWNAMLKKGWKW.DDDISQ
Retrocopy QAEPLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVYPSEQMFWNAMLKKGWKWTDDDISQ

Parental  KDMYNIIKIHNQNNEQAWKEILKWEALHAAECPCGPSLVRFGGKAKEYSPRARIRSWMGYELPFDRHDWI
          KDMYNIIKIHNQNNEQAWKEILKWEALHAAECPCGPSLVRFGGKAKEY.PRARIRSWMGYELPFDRHDWI
Retrocopy KDMYNIIKIHNQNNEQAWKEILKWEALHAAECPCGPSLVRFGGKAKEYFPRARIRSWMGYELPFDRHDWI

Parental  VNRCGTEVRYIIDYYDGGEVNQEYQFTILDVRPAFDSLSAVWDRMKVAWWRWTS
          VNRCG.EVRY.IDYYD.GEVNQEYQFTILD..PAFDSLSAVWDRMKVAWWRWTS
Retrocopy VNRCGKEVRYVIDYYDDGEVNQEYQFTILDMPPAFDSLSAVWDRMKVAWWRWTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1621 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000022393	1 retrocopy	retro_fcat_1706,
Myotis lucifugus	ENSMLUG00000003569	1 retrocopy	retro_mluc_1621 ,
Ictidomys tridecemlineatus	ENSSTOG00000014037	6 retrocopies	retro_itri_1277, retro_itri_1462, retro_itri_1594, retro_itri_1700, retro_itri_242, retro_itri_745,
Tupaia belangeri	ENSTBEG00000002670	1 retrocopy	retro_tbel_1503,