RetrogeneDB ID: retro_mluc_1716

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429892:3024844..3025843(-)
• Located in intron of: ENSMLUG00000024744

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016343
• Aliases: None
• Description: None

Sequence

>retro_mluc_1716
TCTAGGATGGCGACTGTCCAGGGTGAGCTTATAAAGAATTTAACCTCAAAGGAGAGCGTTCCTCATAATAAGATCTCCAT
CATAGGATCCGGGTCGGTTGGCCTAGCCTGCGCCATCAGCATCCTGCTGCGCGGCCTGAGTGACGAGCTCGCCCTGGTGG
ATGTGGCCGAAAGCAAGCTGAGGGGCGAGACGCTGGACCTCCAACACGGCAGTCTTTTCGTGAAAATGCCCAAAATCGTT
TCCAGCAAAGATTACCAAGTCACGGCCAACTCCCGCCTGGTGATCATCACGGCGGGTGTGCGCCAGAAAAAGGGAGAGAC
GCGCCTCGACCTCGTCCAGCGCAACCTGGCCATCTTCAAGCTGATGATTTCTGACATCATAACGCACAGTCCGAACTGCA
AGGTGATCATCGTTTCCAACCCGGTGGATATCTTAACTTACGTCACCTGGAAGCTGAGCGGAATTCCCCAGAACCACGTG
ATCGGAAGCGGCTGCAATTTGGACACCGCCCGTTTCCGGTTCCTGATCGGCCAGAAGCTCGGCCTCCACGCCGAAAGCTG
CCACGGGTGGGTGCTGGGCGAGCACGGGGACTCGTGCGTCCCGGTGTGGAGTGGCGTCAACGTCGCGGGCGTCCCGCTGA
GGGACCTGAACGCGCAGCTAGGGACCGACCAGGACCCCGAGCGCTGGAAAGATGTCCACAAGGAGGTGGTCGCCAGCCCC
TACGAGATCATCAAAACGAAAGGCTACACCTCCTGGGCCATCGGCCTTTCCGTGGCTGACCTGGCGGAAAGTGTTCTGCG
GGACCTTCGGAGAGTGCATCCGGTGTCCACCATCGTGAAGGGTCTCTACGGCATCCGCGAGGAGGTGGCCCTCAGTGTCC
CCTGTGTCCTGGGCGCGGACGGGATCGCAGGCCTGATCCAGGTGAAGCTGACCGCCGAGGAGGAGGCCCGCCTGAAGAAG
AGCGCGGAGACGCTGTGGGAGGTCCTGCGGGCCCTCGAG

Alignment

ORF - retro_mluc_1716 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.17 %
• Parental protein coverage: 92.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SKMATLKDQLIVNLLKEEQSPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHG
          S.MAT....LI.NL...E..P.NKI...G.G.VG.ACAISIL...L.DELALVDV.E.KL.GE..DLQHG
Retrocopy SRMATVQGELIKNLTSKESVPHNKISIIGSGSVGLACAISILLRGLSDELALVDVAESKLRGETLDLQHG

Parental  SLFLKTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLVVSN
          SLF.K.PKIVS.KDY.VTANS.LVIITAG.RQ..GE.RL.LVQRN..IFK..I......SPNCK...VSN
Retrocopy SLFVKMPKIVSSKDYQVTANSRLVIITAGVRQKKGETRLDLVQRNLAIFKLMISDIITHSPNCKVIIVSN

Parental  PVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAG
          PVDILTYV.WKLSG.P.N.VIGSGCNLD.ARFR.L.G..LG.H..SCHGWVLGEHGDS.VPVWSGVNVAG
Retrocopy PVDILTYVTWKLSGIPQNHVIGSGCNLDTARFRFLIGQKLGLHAESCHGWVLGEHGDSCVPVWSGVNVAG

Parental  VSLKNLHPDLGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESMMKNLRRVHPISTMIK
          V.L..L...LGTD.D.E.WK.VHK.VV.S.YE.IK.KGYTSWAIGLSVADLAES....LRRVHP.ST..K
Retrocopy VPLRDLNAQLGTDQDPERWKDVHKEVVASPYEIIKTKGYTSWAIGLSVADLAESVLRDLRRVHPVSTIVK

Parental  GLYGIKDDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQ
          GLYGI...V.LSVPC.LG..GI.....V.LT.EEEARLKKSA.TLW.....L.
Retrocopy GLYGIREEVALSVPCVLGADGIAGLIQVKLTAEEEARLKKSAETLWEVLRALE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1716 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 31 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000009211	8 retrocopies	retro_cfam_1061, retro_cfam_1149, retro_cfam_1182, retro_cfam_1317, retro_cfam_1617, retro_cfam_1946, retro_cfam_2006, retro_cfam_309,
Dipodomys ordii	ENSDORG00000003524	2 retrocopies	retro_dord_439, retro_dord_449,
Felis catus	ENSFCAG00000015735	4 retrocopies	retro_fcat_102, retro_fcat_1839, retro_fcat_1919, retro_fcat_295,
Myotis lucifugus	ENSMLUG00000012155	1 retrocopy	retro_mluc_202,
Myotis lucifugus	ENSMLUG00000016343	4 retrocopies	retro_mluc_1716 , retro_mluc_2031, retro_mluc_2440, retro_mluc_365,
Mustela putorius furo	ENSMPUG00000013730	5 retrocopies	retro_mputfur_1256, retro_mputfur_133, retro_mputfur_1446, retro_mputfur_1476, retro_mputfur_1565,
Ictidomys tridecemlineatus	ENSSTOG00000000014	3 retrocopies	retro_itri_1396, retro_itri_1526, retro_itri_535,
Tarsius syrichta	ENSTSYG00000008062	4 retrocopies	retro_tsyr_1811, retro_tsyr_2064, retro_tsyr_2071, retro_tsyr_731,