RetrogeneDB ID: | retro_fcat_1919 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:53863029..53863658(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015735 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.63 % |
Parental protein coverage: | 58.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ESRLNLVQRNVNI-FKFIIPNVVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRY |
E..LNLVQ.NVNI.FK.II.N.VKYS.NCKL.VVSNPV.ILTYVAWKISGFPKNRV.GSGCNL.S..F.Y | |
Retrocopy | ENLLNLVQHNVNI<FKLIILNIVKYSLNCKLFVVSNPVGILTYVAWKISGFPKNRVTGSGCNLGSFWFHY |
Parental | LMGERLGVHALSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDADKEKWKEVHKQVVDSAYEVI |
L.GERLGVH.LS.H.WV.GEHGDSSVP..SGVNVAGV.LKNLHPDLGTDADKE.WKEVHK.VVDSAYEVI | |
Retrocopy | LIGERLGVHPLSWHRWVPGEHGDSSVPLCSGVNVAGVFLKNLHPDLGTDADKEQWKEVHK*VVDSAYEVI |
Parental | KLK-GYTSWAIGLSVADL-AESIMKNLRRVHPISTMIKGLYGIKDDVFLSVPCILGQNGISDVVKVTLTP |
KLK.GYTSWAIGL.V.DL..ESIMKN.R.VHPIS.M.KGLYGIKD.V.LSV.CILGQNGISDVVKVTLTP | |
Retrocopy | KLK>GYTSWAIGLFVEDL<GESIMKNHRQVHPISIMTKGLYGIKDAVYLSVLCILGQNGISDVVKVTLTP |
Parental | EEE |
EEE | |
Retrocopy | EEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 109 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 163 .24 RPM |
SRP017611_liver | 0 .00 RPM | 655 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009211 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000003524 | 2 retrocopies | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Felis catus | ENSFCAG00000015735 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016343 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000014 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |