RetrogeneDB ID: | retro_fcat_102 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:143653028..143654174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028611 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015735 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.49 % |
Parental protein coverage: | 93.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PFASKSNMATLKDQLIQNLLKEDHTPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMM |
P....S.MAT.K..LI.N...E.....NK....G.G.VGMACAISIL.K.L.DELALVDV.EDKLKGE.M | |
Retrocopy | PVTLVSRMATIKCELIKNFTSEEAVHHNKVSIIGTGSVGMACAISILLKGLTDELALVDVDEDKLKGETM |
Parental | DLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKL |
DLQHGS.F...P.I.S.KDY.VTANS.LV.ITAGARQ..GE.RLNLVQRNV.IFK..I.....YSP.CKL | |
Retrocopy | DLQHGSPFVKMPTIASSKDYLVTANSNLVVITAGARQEKGETRLNLVQRNVAIFKLMISSIIQYSPRCKL |
Parental | LVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPVWSG |
.VVSNPVDILTYVAWK.SGFP.NRVIGSGCNLD.ARFR.L.G..LG.H..SCHGWVLGEHGDSSVPVWSG | |
Retrocopy | IVVSNPVDILTYVAWKLSGFPQNRVIGSGCNLDTARFRFLIGQKLGIHSESCHGWVLGEHGDSSVPVWSG |
Parental | VNVAGVSLKNLHPDLGTDADKEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPI |
VN.AGV.LK.L..D.GTD.D.EKW..VHK.V..SAYE.IK.KGYT.WAIGLSVADL.ESI..NLRRVHP. | |
Retrocopy | VNIAGVPLKDLSSDIGTDKDPEKWENVHKDVIASAYEIIKMKGYTNWAIGLSVADLTESILRNLRRVHPV |
Parental | STMIKGLYGIKDDVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSADTLWGIQKELQ |
ST.IKGLYGI...VFLSVPC.LG.NGI.D.VKVTLTPEE.ARLKKSA.TLW.IQKEL. | |
Retrocopy | STIIKGLYGINKEVFLSVPCVLGENGIADLVKVTLTPEEQARLKKSAETLWEIQKELE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 109 .03 RPM |
SRP017611_kidney | 0 .41 RPM | 163 .24 RPM |
SRP017611_liver | 0 .61 RPM | 655 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009211 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000003524 | 2 retrocopies | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Felis catus | ENSFCAG00000015735 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016343 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000014 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |