RetrogeneDB ID: retro_mluc_1999

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429981:1454351..1454900(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CSNK2A2
• Ensembl ID: ENSMLUG00000000283
• Aliases: None
• Description: None

Sequence

>retro_mluc_1999
AATATTATTAAATTGATTGACGCTGTGAAGTACTCTGTGAAGACACTGGCTTTGGTATTTGAATATATCAATATCAATAA
TATAGATTTTAAGCAACTTTACAGGATCCGGACAGACTGTGATATCTGGTTTTATAAGGATGAAGTACTTCAAGTTCTGA
ATTACTGCCCAGCAAGGGAATTGTGCTTAGGAATGTGAAACCTCCCAATGTCCTGACAGACGCTCACCAACAGGAAAAGC
AGCGGCTGATACCCTGGGGTCTGGCAGAGTTCTGCCCTCTTGCTCAGGACTGCCATGTCCTGTGGCCTCCAGGTACTCCA
AGGGACCAGAGCTCTTGTGGCCTACAAGATGCATGATTTTAGCTTGGATATGTGGAGTTCGGGCTATATGCTAGCAAGCA
TGATTTTTCAGACAGAACTCTTCCTACAGGGACAGGACAACTACAACCAGCTTGTTTGAATTGCCGAGGTTCAGGATACA
AATGAGCTGTATGACTATTTGAAGAAGTATCACATATACCTAGATCCGCCCTTCAGTGATATTCATGGG

Alignment

ORF - retro_mluc_1999 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.02 %
• Parental protein coverage: 64.77 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NIIKLIDTVKDPVSKTPALVFEYIN--NTDFKQLYQILTDFDIRFYMYELLKALDYCH-SKGIMHRDVKP
          NIIKLID.VK..V.KT.ALVFEYIN..N.DFKQLY.I.TD.DI.FY..E.L..L.YC..SKGI..R.VKP
Retrocopy NIIKLIDAVKYSV-KTLALVFEYININNIDFKQLYRIRTDCDIWFYKDEVLQVLNYCP<SKGIVLRNVKP

Parental  HNVMID-HQQKKLRLIDWGLAEFYHPAQEYNVR-VASRYFKGPELL-VDYQMYDYSLDMWSLGCMLASMI
          .NV..D.HQQ.K.RLI.WGLAEF...AQ...V..VASRY.KGPELL.V.Y.M.D.SLDMWS.G.MLASMI
Retrocopy PNVLTDAHQQEKQRLIPWGLAEFCPLAQDCHVL<VASRYSKGPELL<VAYKMHDFSLDMWSSGYMLASMI

Parental  FRKEPFFHGQDNYDQLVRIAKVLGTDELYGYLKKYHIDLDPHFNDILG
          F..E.F..GQDNY.QLV.IA.V..T.ELY.YLKKYHI.LDP.F.DI.G
Retrocopy FQTELFLQGQDNYNQLV*IAEVQDTNELYDYLKKYHIYLDPPFSDIHG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1999 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000000930	1 retrocopy	retro_eeur_442,
Macropus eugenii	ENSMEUG00000013416	1 retrocopy	retro_meug_1470,
Myotis lucifugus	ENSMLUG00000000283	2 retrocopies	retro_mluc_1999 , retro_mluc_2562,
Mustela putorius furo	ENSMPUG00000004713	1 retrocopy	retro_mputfur_1121,
Ochotona princeps	ENSOPRG00000011847	2 retrocopies	retro_opri_149, retro_opri_723,
Ictidomys tridecemlineatus	ENSSTOG00000003538	1 retrocopy	retro_itri_1769,