RetrogeneDB ID: retro_mputfur_1121

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897020.1:4433696..4434637(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000016747
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CSNK2A2
• Ensembl ID: ENSMPUG00000004713
• Aliases: None
• Description: casein kinase 2, alpha prime polypeptide [Source:HGNC Symbol;Acc:2459]

Sequence

>retro_mputfur_1121
GATCAAGATGATTACCAACTGGTTGGAAACTTGGTCGAGGAAAGTATAGTGAACTATTTGAGGCCATCAGCACCACCAAC
AATGAGAGAGAGGTTGTAAATATTCTCAAGCCAATGAAGAAAAAGAAGATAAAACGAGAGGTTAAGATTCTGGAGAACCT
CCGTGGTGGAACAAATATCATTAAGCTGATCGACACTGTGAAGGACCCTGTGTCAAAGACCCCAGCTTTGGTATTTGAAT
GTATCAGTACTACAGATCTTAAGCAACTTGACCAGGTCCTGACAGACTTTGATATCGGGTTTTATATGTATGAGCTACTT
AAGGCCCTGGATTCCTGCCACGGCAAGGGAATCACGCACAGGAATGTGAAACCTCACAAGGTCGTGAGAGATCACCAGCC
GAAAAAGCTGCGACTGATAGCCTGGGGTCTGGCAGAGTTCCACCATCCTGCTCAGGAGTACAATGTCCGTGTAGCCTCGA
GATATTTCAAGGGCCCGGAGCTTCTTGTGGACGATCAGATGTATGATTACAGCTTGGACATGTGGAGTTTGGGCTATGTG
TTAGCAATGATCTTTCGAAAGGAGCCCTTCTGTCACGGACAGCACAACTATGACCAGCTTGTTCGCATTGCCAAGGTTCT
GGGTACAGATGAGCTGTATGGGTATCTGAAGAAATATCACATAGACCTAGATCCGCACTTCAACGAAATCCTGGGACAAC
ATTCACGGAAATGCTGGGAAAACTTTATCCATAGTGAGAACAGATACCTCGTCAGCCCCGAGGCTCTAGATCTTCTGGAC
AAATTTCTGCGATACGACCATCAACAGACACTGACTGCCAAAGAGGCCATGGAGCACCCGGACTTCTATACCCTGCTGAA
GGAGCAGCCCCAGCCTTCTGCAGGCAACACTGTGCTTTCCAGGGGCCTCACGGCAGCCCGG

Alignment

ORF - retro_mputfur_1121 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.76 %
• Parental protein coverage: 96.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NQDDYQLVR-KLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILENLRGGTNIIKLIDTVKD
          .QDDYQLV..KLGRGKYSE.FEAI..TNNER.VV.ILKP.KKKKIKREVKILENLRGGTNIIKLIDTVKD
Retrocopy DQDDYQLVG<KLGRGKYSELFEAISTTNNEREVVNILKPMKKKKIKREVKILENLRGGTNIIKLIDTVKD

Parental  PVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQQKKLRL
          PVSKTPALVFE.I..TD.KQL.Q.LTDFDI.FYMYELLKALD.CH.KGI.HR.VKPH.V..DHQ.KKLRL
Retrocopy PVSKTPALVFECISTTDLKQLDQVLTDFDIGFYMYELLKALDSCHGKGITHRNVKPHKVVRDHQPKKLRL

Parental  IDWGLAEFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGQDNYDQLV
          I.WGLAEF.HPAQEYNVRVASRYFKGPELLVD.QMYDYSLDMWSLG..LA.MIFRKEPF.HGQ.NYDQLV
Retrocopy IAWGLAEFHHPAQEYNVRVASRYFKGPELLVDDQMYDYSLDMWSLGYVLA-MIFRKEPFCHGQHNYDQLV

Parental  RIAKVLGTDELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRL
          RIAKVLGTDELYGYLKKYHIDLDPHFN.ILGQHSRK.WENFIHSENR.LVSPEALDLLDK.LRYDHQQ.L
Retrocopy RIAKVLGTDELYGYLKKYHIDLDPHFNEILGQHSRKCWENFIHSENRYLVSPEALDLLDKFLRYDHQQTL

Parental  TAKEAMEHPYFYPVVKEQSQPSADNAVLSSGLTAAR
          TAKEAMEHP.FY...KEQ.QPSA.N.VLS.GLTAAR
Retrocopy TAKEAMEHPDFYTLLKEQPQPSAGNTVLSRGLTAAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1121 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1121 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000000930	1 retrocopy	retro_eeur_442,
Macropus eugenii	ENSMEUG00000013416	1 retrocopy	retro_meug_1470,
Myotis lucifugus	ENSMLUG00000000283	2 retrocopies	retro_mluc_1999, retro_mluc_2562,
Mustela putorius furo	ENSMPUG00000004713	1 retrocopy	retro_mputfur_1121 ,
Ochotona princeps	ENSOPRG00000011847	2 retrocopies	retro_opri_149, retro_opri_723,
Ictidomys tridecemlineatus	ENSSTOG00000003538	1 retrocopy	retro_itri_1769,