RetrogeneDB ID: | retro_opri_723 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_26:1029681..1030231(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK2A2 | ||
Ensembl ID: | ENSOPRG00000011847 | ||
Aliases: | None | ||
Description: | casein kinase 2, alpha prime polypeptide [Source:HGNC Symbol;Acc:2459] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 53.47 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LVFEYINNTDFKQLYQILTD-FDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMIDHQ-QQKLRLIDWGL |
LVFEYI.NTDFKQ..QILTD.FD..FY.YELL.ALDY.HSKGI.H.D.KP.NVMI..Q...K..LIDWGL | |
Retrocopy | LVFEYISNTDFKQFCQILTD<FDVQFYVYELLTALDYFHSKGITHKDMKPRNVMIEPQ<MKKPQLIDWGL |
Parental | AEFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKV |
AEF...A.EY.V..A.RY...P..LVDYQMYDYSLD.WSL..M.ASM.F..EPFF.GQ.N..QL..IAKV | |
Retrocopy | AEFCQSA*EYSVCIALRYSQEPGFLVDYQMYDYSLDNWSLD*MIASMVF*MEPFFQGQENAEQLAHIAKV |
Parental | LGTDELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSP |
LG..ELYGYL.K.HIDLDPH...............FI.SE.RHL.SP | |
Retrocopy | LGMNELYGYL-KCHIDLDPHXXXXXXXXXXXXXXXFIDSEDRHLASP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000000930 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013416 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000283 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004713 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011847 | 2 retrocopies |
retro_opri_149, retro_opri_723 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000003538 | 1 retrocopy |