RetrogeneDB ID: retro_mluc_394

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430078:231301..231568(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023172
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000028065
• Aliases: None
• Description: None

Sequence

>retro_mluc_394
ATGACAACCTCCAGCCGTGCACCAGATCTGTACCCAGAGATGCTGAGAGAGAGCAAGCATTTCAGCACCTACAATTACAG
AACTTATGCTGTCAGGAGGATAAGCGATGCCTTCAGAGGAAATAAGAATGTAAAAGATCCTGTGGAAGTTCAGACTCTAG
TGAATAAAGCCAAGAGCGTCCTGGAAAGGATTCGTCGACAGGGCCACAGGGGCCAACTGTATTCGACTGACAAGCTTATC
ATCGAGAATCAGAAGCCTGAGACCTAA

Alignment

ORF - retro_mluc_394 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.73 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAASSRARVLDLYRAMLRESKQFSAYNYRTYAIRKIRDAFRENKNMKDPVEIQALVNKAKRDLEMIRRQV
          M..SSRA...DLY..MLRESK.FS.YNYRTYA.R.I.DAFR.NKN.KDPVE.Q.LVNKAK..LE.IRRQ.
Retrocopy MTTSSRAP--DLYPEMLRESKHFSTYNYRTYAVRRISDAFRGNKNVKDPVEVQTLVNKAKSVLERIRRQG

Parental  HIGQLYSTDKLIIENQEKPKT
          H.GQLYSTDKLIIENQ.KP.T
Retrocopy HRGQLYSTDKLIIENQ-KPET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_394 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031432	1 retrocopy	retro_btau_783,
Callithrix jacchus	ENSCJAG00000021370	1 retrocopy	retro_cjac_1371,
Homo sapiens	ENSG00000214113	1 retrocopy	retro_hsap_194,
Macropus eugenii	ENSMEUG00000005958	1 retrocopy	retro_meug_656,
Myotis lucifugus	ENSMLUG00000028065	1 retrocopy	retro_mluc_394 ,
Mustela putorius furo	ENSMPUG00000000532	1 retrocopy	retro_mputfur_1459,
Mus musculus	ENSMUSG00000046573	1 retrocopy	retro_mmus_2374,
Nomascus leucogenys	ENSNLEG00000011472	1 retrocopy	retro_nleu_1002,
Rattus norvegicus	ENSRNOG00000047970	2 retrocopies	retro_rnor_1862, retro_rnor_2052,
Tursiops truncatus	ENSTTRG00000007073	1 retrocopy	retro_ttru_552,