RetrogeneDB ID: retro_mluc_395

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429862:2622619..2623654(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030726
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017052
• Aliases: None
• Description: None

Sequence

>retro_mluc_395
GGCGGTGGCGGGAAGCGCAGGCCCGGCCGGGAGGGGCAGCAGTGTGAAAAAACAGTTGATGTGAAGAAGAGTAAATCCTG
TGAAGCTGATGTCTCTAGTGACCTTCGAAAAGAAGTAGAAAATCATTATAAGCTTTCTCTGCCTGAAGATTTCTATCACT
TCTGGAAGTTCTGTGAAGAACTTGATCCTGAAAAGCCAGCTGATTCACTTTCCGAAAGCCTTGGACTTCAATTAGTGGGT
CCGTATGACATCCTTGCCGGAAAACATAAAATGAAAAAAAAATCATCGAGCCTGAATTTTAACCTTCACTGGAGATTTTA
CTATGATCCTCCTGAGTTCCAGACAATAATTATTGGAGATAATAAAACTCAGTTCCACATGGGGTATTTCAGGGATTCTC
CTGATGAACTTCCTGTATATGTTGGTACAAATGAAGCAAAGAAAAACTGTGTAATTGTTCAAAATAGAGATAATGTGTTT
GCTGCGGTTAGATTATTTTTGATGAAAAAACTTAAAGAAGTAACAGATAAAAAGAAAACTAGTTTCTTGAAATTCATAGA
TGAAAAGCTTACAGAAGCAGCCAGAGAACTGGGGTACTCACTGGAACAGAGAACCGTGACGATGAAGCAGAGAGACAAGA
AAGTCGTGACAAAGACCTTTCATGGTGCAGGCTTGGTTGTTCCAGTTGATAAAAATGATGTTGGGTACAGAGAGCTCCCT
GAAACAGATGCCAACCTCAAGAGAATTTGCAAGGCAATTGTTGAGGCACCAAGTGATGAGGAGAAACTAAAGGCTTTTGC
TCCCACTCAGGAAATGATGACCTTTGTGCAGTTTGCTAATGACGAATGTGACTATGGCATGGGGCTAGAGTTGGGAATGG
ACCTCTTTTGTTATGGTTCACATTATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATACAATCTGTTGAAGAGG
AATCTCTTTGCAGAAATTATTGAAGATCATCTGGCAAACAGAAGTAAAGAGAACACAGACCAGCTTGCAGCATGA

Alignment

ORF - retro_mluc_395 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.55 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGGGKRRPGREGQQCEKTVDVKKSKSCEADVSSDLRKEVENHYKLSLPEDFYHFWKFCEELDPEKPADSL
          GGGGKRRPGREGQQCEKTVDVKKSKSCEADVSSDLRKEVENHYKLSLPEDFYHFWKFCEELDPEKPADSL
Retrocopy GGGGKRRPGREGQQCEKTVDVKKSKSCEADVSSDLRKEVENHYKLSLPEDFYHFWKFCEELDPEKPADSL

Parental  SESLGLQLVGPYDILAGKHKMKKKSSSLNFNLHWRFYYDPPEFQTIIIGDNKTQFHMGYFRDSPDELPVY
          SESLGLQLVGPYDILAGKHKMKKKSSSLNFNLHWRFYYDPPEFQTIIIGDNKTQFHMGYFRDSPDELPVY
Retrocopy SESLGLQLVGPYDILAGKHKMKKKSSSLNFNLHWRFYYDPPEFQTIIIGDNKTQFHMGYFRDSPDELPVY

Parental  VGTNEAKKNCVIVQNGDNVFAAVRLFLMKKLKEVTDKKKTSFLKSIDEKLTEAARELGYSLEQRTVKMKQ
          VGTNEAKKNCVIVQN.DNVFAAVRLFLMKKLKEVTDKKKTSFLK.IDEKLTEAARELGYSLEQRTV.MKQ
Retrocopy VGTNEAKKNCVIVQNRDNVFAAVRLFLMKKLKEVTDKKKTSFLKFIDEKLTEAARELGYSLEQRTVTMKQ

Parental  RDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDANLKRICKAIVEAPSDEERLKAFAPIQEMMTFVQFAN
          RDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDANLKRICKAIVEAPSDEE.LKAFAP.QEMMTFVQFAN
Retrocopy RDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDANLKRICKAIVEAPSDEEKLKAFAPTQEMMTFVQFAN

Parental  DECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRNLFAEIIEDHLANRSKENTDQLAA
          DECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRNLFAEIIEDHLANRSKENTDQLAA
Retrocopy DECDYGMGLELGMDLFCYGSHYFHKVAGQLLPLAYNLLKRNLFAEIIEDHLANRSKENTDQLAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_395 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020132	1 retrocopy	retro_btau_611,
Equus caballus	ENSECAG00000013735	1 retrocopy	retro_ecab_551,
Gorilla gorilla	ENSGGOG00000003090	1 retrocopy	retro_ggor_2306,
Myotis lucifugus	ENSMLUG00000017052	1 retrocopy	retro_mluc_395 ,
Otolemur garnettii	ENSOGAG00000008007	1 retrocopy	retro_ogar_807,
Ictidomys tridecemlineatus	ENSSTOG00000001481	1 retrocopy	retro_itri_101,
Tursiops truncatus	ENSTTRG00000009751	1 retrocopy	retro_ttru_862,