RetrogeneDB ID: | retro_mmul_1275 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:1856058..1856883(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ESRRA | ||
Ensembl ID: | ENSMMUG00000017803 | ||
Aliases: | None | ||
Description: | estrogen-related receptor alpha [Source:HGNC Symbol;Acc:3471] |
Percent Identity: | 89.82 % |
Parental protein coverage: | 65.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVSGGPRKTAPVNALVSHLLVVEPEKLYAMPDPAGP |
GVRLDRVRG..QKYK.RPEVD.LPFPGPFPAGPLAV.GGPRKTAPVN.LVSHLLVVEPEKLYAMPDPAGP | |
Retrocopy | GVRLDRVRGEWQKYKQRPEVDLLPFPGPFPAGPLAVAGGPRKTAPVNVLVSHLLVVEPEKLYAMPDPAGP |
Parental | DGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAE |
D.HLPAVATLCDLFD.EIVVTISWAKSIPGFS.LSLSDQMS.LQS.WME.LV.GVAQ.SLPLQDELAFAE | |
Retrocopy | DWHLPAVATLCDLFD*EIVVTISWAKSIPGFSLLSLSDQMSGLQSLWMELLVPGVAQLSLPLQDELAFAE |
Parental | DLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEA |
DLVLDEEGARAAGLGE.G.ALLQLVRRLQALRLE.EEYVLLKALALA.S..VHIEDAEAVEQL.EALHEA | |
Retrocopy | DLVLDEEGARAAGLGERGSALLQLVRRLQALRLEGEEYVLLKALALASSSCVHIEDAEAVEQLLEALHEA |
Parental | LLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD |
LLEYEAGRAG.G.GAE..RAGRLLLTLPLLRQT.GKVLAHFYGVKLE.KVP.HKLFLEMLEAMMD | |
Retrocopy | LLEYEAGRAGTGEGAEPCRAGRLLLTLPLLRQTVGKVLAHFYGVKLEVKVPVHKLFLEMLEAMMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .18 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .76 RPM |
SRP007412_heart | 0 .00 RPM | 34 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 31 .45 RPM |
SRP007412_liver | 0 .04 RPM | 25 .89 RPM |
SRP007412_testis | 0 .04 RPM | 4 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018030 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000262 | 1 retrocopy | |
Homo sapiens | ENSG00000173153 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001333 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017803 | 1 retrocopy |
retro_mmul_1275 ,
|
Nomascus leucogenys | ENSNLEG00000004971 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003107 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003833 | 1 retrocopy |