RetrogeneDB ID: | retro_nleu_2856 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397453.1:663923..664757(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ESRRA | ||
Ensembl ID: | ENSNLEG00000004971 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.07 % |
Parental protein coverage: | 67.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSSQVVGIEPLCIKAEPASPDSPKGSSETET-EPPVALAPGPAPTRCLPGHKEEEDGEG-AGPGEQGGGK |
MSSQVVG.EPL.I.AEPA.PDSPKGSSETET.EPPVAL..GPAPT.CLPGHKE.EDGEG.AGPGEQGGGK | |
Retrocopy | MSSQVVGSEPLYIMAEPARPDSPKGSSETET>EPPVALVSGPAPTHCLPGHKE*EDGEG<AGPGEQGGGK |
Parental | LVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQACRFTK |
LVLSSLPKRLCLVCGDVASGYH.GVASCE.CK.FFKRTIQGSI.YSC.A.NE.EITK.RR....AC.... | |
Retrocopy | LVLSSLPKRLCLVCGDVASGYHNGVASCEDCKTFFKRTIQGSIKYSCLACNE*EITK-RRR--KACQ--A |
Parental | CLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAPVNALVSHLLVVEPEK |
CL.......GVRLD..RGGRQKYKRR..VDPLPFPGPFPAGPLAVAGGPRKTA.PVNALVSHL.VVEPEK | |
Retrocopy | CLH--QVPAGVRLDCLRGGRQKYKRRQRVDPLPFPGPFPAGPLAVAGGPRKTA-PVNALVSHLMVVEPEK |
Parental | LYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL |
LYA.PDP.GPDGHLPAVATLCDLF.REIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLV.GVAQRSL | |
Retrocopy | LYALPDPPGPDGHLPAVATLCDLFNREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVPGVAQRSL |
Parental | PLQDELAF |
PLQDELAF | |
Retrocopy | PLQDELAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018030 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000262 | 1 retrocopy | |
Homo sapiens | ENSG00000173153 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001333 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017803 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004971 | 2 retrocopies |
retro_nleu_2855, retro_nleu_2856 ,
|
Pongo abelii | ENSPPYG00000003107 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003833 | 1 retrocopy |