RetrogeneDB ID: | retro_mmul_1124 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:110502381..110502906(-) | ||
Located in intron of: | ENSMMUG00000017568 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSMMUG00000013129 | ||
Aliases: | None | ||
Description: | peptidyl-prolyl cis-trans isomerase H [Source:RefSeq peptide;Acc:NP_001247566] |
Percent Identity: | 84.18 % |
Parental protein coverage: | 98.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VANSSPVNPVVFFDVSIGGQEVGRMKIELFAD-VVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKD |
VANSSP.NP.VFFDVS.G.QEVGR.KI.LFA..VVPK.AENF.QF.T.EFRKDGVPIGYKGSTFHRVIKD | |
Retrocopy | VANSSPANPMVFFDVSNGSQEVGRTKIKLFAE<VVPKMAENFAQFYTREFRKDGVPIGYKGSTFHRVIKD |
Parental | FMIQGGDFVNGDGTGVASIYRGPFADENFKL-RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV |
FM.QGGDFV.GDG.GV.S.Y..PFAD.NFKL.RHSAPGLLS.ANSG.STNGCQFFITCSKCDWLDGKH.. | |
Retrocopy | FMTQGGDFVTGDGIGVTSNYVEPFADKNFKL>RHSAPGLLSVANSGSSTNGCQFFITCSKCDWLDGKHIM |
Parental | FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM |
FGK.IDGLLVMRKIENVPTGPNNKPKLPVVIS.C.EM | |
Retrocopy | FGKLIDGLLVMRKIENVPTGPNNKPKLPVVISKCEEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 8 .09 RPM |
SRP007412_cerebellum | 0 .06 RPM | 8 .85 RPM |
SRP007412_heart | 0 .12 RPM | 8 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .16 RPM |
SRP007412_liver | 0 .04 RPM | 4 .75 RPM |
SRP007412_testis | 0 .00 RPM | 24 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_928 |
Pan troglodytes | retro_ptro_644 |
Gorilla gorilla | retro_ggor_748 |
Pongo abelii | retro_pabe_797 |