>retro_mmul_197
ATGGCTACAAACTTCCTAGTACATGAGAAGATCTGGTTTGACAACTTCAAATATGACGATGCAGAAAGGAGATTCTACGA
GCAGATGAACGGGCCTGTGGCCGGTGCCTCCCGCCAGACCTCAGGCCCCGGGGCCTCCAGCGGCCCCAGCGGAGACCACA
GCGAGCTTGTCGTCCGGATCGCCAGTTTGGAAGTGGAGAACCAGAGCCTGCGTGGCGTGGTACAGGAGCTGCAGCAGGCC
ATCTCCAAGCTGGAGGCCCGGCTGAACGTGCTGGAGAAGAGCTCGCCTGGCCACCGGGCCACGGCCCCGCAGACCCAGCA
CGTGTCTCCCATGCGCCAAGTGGAGCCCCCGGCCAAGAAGCCAGCCACACCAGCAGAGGATGACGAGGATGATGACACTG
ACCTGTTTGGCAGCGACAATGAGGAGGAGGACAAGGAGGCGGCACAGCTGCGGGAGGAGCGGCTGCGGCAGTACGCGGAG
AAGAAGGCCAAGAAGCCTGCACTGGTGGCCAAGTCCTCCATCCTGCTGGATGTCAAGCCTTGGGACGATGAGACGGACAT
GGCCCAGCTGGAGGCCTGTGTGCGATCTATCCAGCTGGACGGGCTGGTCTGGGGGGCTTCCAAGCTGGTGCCCGTGGGCT
ACGGTATCTGGAAGCTACAGATTCAGTGTGTGGTGGAGGACGACAAGGTGGGGACAGACTTGCTGGAGGAGGAGATCACC
AAGTTTGAGGAGCACGTGCAGAGTGTCGATATCGCAGCTTTCAACAAGATTTGA
ORF - retro_mmul_197 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.83 % |
Parental protein coverage: |
89.55 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MATNFLVHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQTSGPGASSGPSGDHSELVVRIASLEVENQSL |
| MATNFLVHEKIWFD.FKYDDAERRFYEQMNGPVAGASRQTSGPGASSGPSGDHSELVVRIASLEVENQSL |
Retrocopy | MATNFLVHEKIWFDNFKYDDAERRFYEQMNGPVAGASRQTSGPGASSGPSGDHSELVVRIASLEVENQSL |
|
Parental | RGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDN |
| RGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDD.DLFGSDN |
Retrocopy | RGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDTDLFGSDN |
|
Parental | EEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLV |
| EEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLV |
Retrocopy | EEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLV |
|
Parental | PVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI |
| PVGYGI.KLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI |
Retrocopy | PVGYGIWKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .56 RPM |
17 .93 RPM |
SRP007412_brain_prefrontal_cortex |
0 .56 RPM |
56 .40 RPM |
SRP007412_cerebellum |
1 .16 RPM |
19 .37 RPM |
SRP007412_heart |
4 .77 RPM |
101 .28 RPM |
SRP007412_kidney |
3 .40 RPM |
52 .11 RPM |
SRP007412_liver |
4 .12 RPM |
113 .76 RPM |
SRP007412_testis |
0 .60 RPM |
109 .50 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_197 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_197 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_197 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
11 retrocopies.