RetrogeneDB ID: | retro_mmul_2072 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:37347106..37347982(-) | ||
Located in intron of: | ENSMMUG00000006107 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD9 | ||
Ensembl ID: | ENSMMUG00000010151 | ||
Aliases: | None | ||
Description: | BTB/POZ domain-containing protein KCTD9 [Source:RefSeq peptide;Acc:NP_001247831] |
Percent Identity: | 91.44 % |
Parental protein coverage: | 75.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPF |
MRRVTLFLNGSPKNGKVVA.YGTLSDLLSVASSKLGIK..SVYN.KGGLIDDIALIRDDDVLFV.E.EPF | |
Retrocopy | MRRVTLFLNGSPKNGKVVAIYGTLSDLLSVASSKLGIKDASVYNEKGGLIDDIALIRDDDVLFV*EEEPF |
Parental | IDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDR |
ID.QTDSKPPEGLLGFHTD.LTLNVGGRYFTTT.STLVNKEPDSMLAHM.KD.GVWGNKQDHRGAFLIDR | |
Retrocopy | IDLQTDSKPPEGLLGFHTD*LTLNVGGRYFTTTWSTLVNKEPDSMLAHMLKDRGVWGNKQDHRGAFLIDR |
Parental | SPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLL |
SPEYFEPILNYL.HGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFV.FLL | |
Retrocopy | SPEYFEPILNYLHHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVQFLL |
Parental | ATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKM |
ATPTKSELRCQ.LNFSG.DLSR.DLRYIN.KM.NL..C.LAHANLCCANLE.ADLSGSVLDCANLQ.VKM | |
Retrocopy | ATPTKSELRCQSLNFSGSDLSRWDLRYINLKMVNLCCCSLAHANLCCANLE*ADLSGSVLDCANLQEVKM |
Parental | LCSNAEGASLKL |
LCSN.EG.SLKL | |
Retrocopy | LCSNEEGTSLKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 14 .01 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .28 RPM |
SRP007412_heart | 0 .00 RPM | 25 .26 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .28 RPM |
SRP007412_liver | 0 .00 RPM | 4 .71 RPM |
SRP007412_testis | 0 .15 RPM | 22 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012157 | 1 retrocopy | |
Homo sapiens | ENSG00000104756 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000004480 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000010151 | 3 retrocopies |
retro_mmul_1083, retro_mmul_1218, retro_mmul_2072 ,
|
Nomascus leucogenys | ENSNLEG00000016156 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000018452 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020092 | 3 retrocopies |