RetrogeneDB ID: | retro_mmul_2295 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 8:76336798..76337196(+) | ||
| Located in intron of: | ENSMMUG00000009755 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RGS10 | ||
| Ensembl ID: | ENSMMUG00000021610 | ||
| Aliases: | None | ||
| Description: | regulator of G-protein signaling 10 [Source:RefSeq peptide;Acc:NP_001248583] |
Retrocopy-Parental alignment summary:
>retro_mmul_2295
TACATCCATGACAGTAATAGCAGTTCTGGCAGCAGCCACCAGCGCCTCAAGAGCACAGCCAAACGGGTGGCTTTCCTGGA
TAATCCGGTGGAAGACCTAGAAGGCATGACAAAATTTAGGAAATTTTTTAAAAAGAAATTCAATGAAGAAAATATTTTGT
TTTGGCTAGCATGTAAAGATTTCTTTTTTTAATGCAAGATAAGCAGATGCAGGAAAAGGCAAAGGAGGTCTACATGACCT
TTCTTTCCAGTAAGGCCTCGTCAGAAGTCAAAAAGAGGCAGTCTTCGCTCAACAAAAAGATTCTGGAAGAATCACATCCT
CTGATGTTCCAGGAACTCCAGGACTGGATCTTCAATCTCACCAAGTACAACAGCTACAGTAGCTGCTTAAAGTTTGAC
ORF - retro_mmul_2295 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.67 % |
| Parental protein coverage: | 80.24 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | HIHDSDGSSSSSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACED-FKKMQDKTQ |
| .IHDS..SS.SSHQ.LKSTAK..A.L.N..ED.EG...FR.F.KK.F.EEN.LFWLAC.D.F.......Q | |
| Retrocopy | YIHDSNSSSGSSHQRLKSTAKRVAFLDNPVEDLEGMTKFRKFFKKKFNEENILFWLACKD<FLFLMQDKQ |
| Parental | MQEKAKEIYMTFLSSKASSQVNVEGQSRLNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSD |
| MQEKAKE.YMTFLSSKASS.V....QS.LN.KILEE.HPLMFQ.LQD.IFNL.KY.SYS..LK.D | |
| Retrocopy | MQEKAKEVYMTFLSSKASSEVK-KRQSSLNKKILEESHPLMFQELQDWIFNLTKYNSYSSCLKFD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 2 .24 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .22 RPM |
| SRP007412_cerebellum | 0 .06 RPM | 1 .29 RPM |
| SRP007412_heart | 0 .00 RPM | 1 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 2 .00 RPM |
| SRP007412_liver | 0 .12 RPM | 0 .59 RPM |
| SRP007412_testis | 0 .45 RPM | 0 .15 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2295 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2295 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2295 has 2 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Gorilla gorilla | retro_ggor_2669 |
| Pongo abelii | retro_pabe_3268 |
Parental genes homology:
Parental genes homology involve 5 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000008414 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000021610 | 1 retrocopy |
retro_mmul_2295 ,
|
| Nomascus leucogenys | ENSNLEG00000016735 | 1 retrocopy | |
| Procavia capensis | ENSPCAG00000003150 | 1 retrocopy | |
| Pongo abelii | ENSPPYG00000002702 | 1 retrocopy |