RetrogeneDB ID: | retro_mmul_2336 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:43824108..43824721(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB4A | ||
Ensembl ID: | ENSMMUG00000017720 | ||
Aliases: | None | ||
Description: | ras-related protein Rab-4A [Source:RefSeq peptide;Acc:NP_001244480] |
Percent Identity: | 84.06 % |
Parental protein coverage: | 93.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KFLVIGNAG-TGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY |
KFLVIGNA..TGKSCL..QFI.......DSNHTIGVEFGSK.INV.GKYVKLQI.DTA.QE.F.SV.RSY | |
Retrocopy | KFLVIGNAE<TGKSCLFRQFIXXXX>QNDSNHTIGVEFGSKVINVCGKYVKLQIRDTARQE*FKSVKRSY |
Parental | YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMF |
Y.GA.GALLVY.I.SRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN.LMF | |
Retrocopy | YPGATGALLVYNISSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN*LMF |
Parental | LETSALTGENVEEAFVQCAR-KILNKIESGELDPERMGSGIQYGDAALRQLRSPRRAQAPNAQECGC |
LETSALTGENVEEAFVQCAR.KILNKIES.ELDPERMGSG.QY.DA.LRQL.S.R..QAP.AQECGC | |
Retrocopy | LETSALTGENVEEAFVQCAR>KILNKIESDELDPERMGSGVQYRDAVLRQLKSLRCTQAPKAQECGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 31 .04 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 30 .70 RPM |
SRP007412_cerebellum | 0 .13 RPM | 22 .54 RPM |
SRP007412_heart | 0 .00 RPM | 21 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .25 RPM |
SRP007412_liver | 0 .00 RPM | 11 .52 RPM |
SRP007412_testis | 0 .00 RPM | 33 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013866 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000018042 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017720 | 1 retrocopy |
retro_mmul_2336 ,
|
Nomascus leucogenys | ENSNLEG00000014339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000128 | 1 retrocopy |