RetrogeneDB ID: | retro_etel_681 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_14258:2006..2389(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000003680 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB4A | ||
Ensembl ID: | ENSETEG00000018042 | ||
Aliases: | None | ||
Description: | RAB4A, member RAS oncogene family [Source:HGNC Symbol;Acc:9781] |
Percent Identity: | 80.92 % |
Parental protein coverage: | 58.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSQTAMSETYDFL-FKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIAVEFGSKIINVGGKYVKLQIWH |
.SQ.AMSETYDFL.FKFLVIGNAGTGKSCLLHQFI.....KDDSNHT...EFGSKI.NVGGKYVKLQI.. | |
Retrocopy | ISQMAMSETYDFL>FKFLVIGNAGTGKSCLLHQFIXXX<XKDDSNHTKGEEFGSKIVNVGGKYVKLQIGD |
Parental | TAGQERFRSVTRSYYRGAAG-ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK |
T.G.ERFRSVTRSYYRGAAG.ALLV..ITS.ETYN.LTNWLT.A.MLASQN.VI.LCGNKK | |
Retrocopy | TTG*ERFRSVTRSYYRGAAG<ALLV*GITSQETYNVLTNWLTGAKMLASQNMVILLCGNKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013866 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010340 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018042 | 3 retrocopies |
retro_etel_1163, retro_etel_122, retro_etel_681 ,
|
Macaca mulatta | ENSMMUG00000017720 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000128 | 1 retrocopy |