RetrogeneDB ID: | retro_mmul_2433 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:21848391..21849347(-) | ||
Located in intron of: | ENSMMUG00000023648 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1864 | ||
Ensembl ID: | ENSMMUG00000010970 | ||
Aliases: | HNRNPR, HNRPR | ||
Description: | None |
Percent Identity: | 82.89 % |
Parental protein coverage: | 52.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | AQARRRLMSGKVKVWGNVVTVEWADPV-EEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVK |
.QAR.RLMSGKVKVWGN.VT.EW.DPV.EEPDPEV.AKVKVLFVRNL....T.EILEKSFSEFG.L.RV. | |
Retrocopy | SQARCRLMSGKVKVWGNAVTAEWTDPV<EEPDPEVIAKVKVLFVRNLG---TDEILEKSFSEFGELQRVN |
Parental | KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYY-HPPP |
KLKDYAFVH.EDRGA.VKAMDEMNGKEIEGEE.EIVLAKPPDKKRKERQAARQASRSTAYEDY.Y.HPPP | |
Retrocopy | KLKDYAFVHSEDRGAVVKAMDEMNGKEIEGEELEIVLAKPPDKKRKERQAARQASRSTAYEDYHY<HPPP |
Parental | RMPPPIRGRGRGGGRGGYGYPPDYYG-YEDYYDDYYGYDYHDYRGGYED-PYYGYDDGYAVRGRGGGRGG |
RM.PP.RG.GRGG....YGYPPD.YG..EDYY....GY.YH.Y.GGYE..PYYGYDDGYAV..R.GGRGG | |
Retrocopy | RMLPPMRGWGRGG----YGYPPDHYG<HEDYY----GYYYHNYHGGYEN>PYYGYDDGYAVTER-GGRGG |
Parental | RGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGR--GSRGSRGNR-GGNVGGKR-K |
.GAPPPPRGRGAPPPRG.AGY.QRGAPLGPPRGSRGGRGGPAQQQRGR..GSRGS.GN..GGNVGGKR.K | |
Retrocopy | QGAPPPPRGRGAPPPRGTAGY*QRGAPLGPPRGSRGGRGGPAQQQRGRGCGSRGSWGNQ<GGNVGGKR<K |
Parental | ADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK |
AD.YNQPDSK.RQT.NQQNW.SQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDT...QWK | |
Retrocopy | ADAYNQPDSKHRQT-NQQNWVSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTHR*QWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 85 .27 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 63 .15 RPM |
SRP007412_cerebellum | 0 .13 RPM | 84 .08 RPM |
SRP007412_heart | 0 .06 RPM | 51 .58 RPM |
SRP007412_kidney | 0 .12 RPM | 48 .83 RPM |
SRP007412_liver | 0 .00 RPM | 20 .15 RPM |
SRP007412_testis | 0 .90 RPM | 52 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_651 |
Pan troglodytes | retro_ptro_474 |
Gorilla gorilla | retro_ggor_568 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000125944 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013250 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010970 | 1 retrocopy |
retro_mmul_2433 ,
|
Macaca mulatta | ENSMMUG00000012575 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016144 | 1 retrocopy | |
Mus musculus | ENSMUSG00000066037 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009179 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010462 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000324 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002251 | 1 retrocopy |