RetrogeneDB ID: | retro_mmul_2594 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:70320775..70321372(-) | ||
Located in intron of: | ENSMMUG00000005663 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BCL2L2-PABPN1 | ||
Ensembl ID: | ENSMMUG00000014747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.56 % |
Parental protein coverage: | 65.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DSGQGTAPALELEAIKARVREMEEEAEKLKELQN-EVEKQMNMSPPPGNAGPVIMS-IEEKMEADARSIY |
D.G.G.....ELE.IK.RVREMEEEAEKLKELQN.EVEKQMN.SPP.GNAGPVIMS.IEEKMEADARSIY | |
Retrocopy | DPGYGAIEDQELETIKTRVREMEEEAEKLKELQN>EVEKQMNTSPPLGNAGPVIMS<IEEKMEADARSIY |
Parental | VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI |
VGNVDYGATAEELEAHFHGC.SVNRVTILCDKFSGHPKGFAY.EFSDKESVRTSL..DESLFRGRQIKVI | |
Retrocopy | VGNVDYGATAEELEAHFHGCDSVNRVTILCDKFSGHPKGFAYTEFSDKESVRTSLVSDESLFRGRQIKVI |
Parental | PKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY |
PKRTNRPGI.TTDRGFPRARY.A.TTNYNS..SRFYSGFNSRP.GRVYRGRARATSWYSPY | |
Retrocopy | PKRTNRPGINTTDRGFPRARYGAQTTNYNSYLSRFYSGFNSRPQGRVYRGRARATSWYSPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 89 .86 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 95 .75 RPM |
SRP007412_cerebellum | 0 .77 RPM | 130 .63 RPM |
SRP007412_heart | 0 .35 RPM | 65 .01 RPM |
SRP007412_kidney | 0 .47 RPM | 102 .93 RPM |
SRP007412_liver | 0 .16 RPM | 41 .76 RPM |
SRP007412_testis | 1 .02 RPM | 149 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4855 |
Pan troglodytes | retro_ptro_3232 |
Gorilla gorilla | retro_ggor_3030 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000100836 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000031227 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014747 | 1 retrocopy |
retro_mmul_2594 ,
|
Mus musculus | ENSMUSG00000022194 | 1 retrocopy |