Parental gene:

PABPN1, ENSG00000100836

Aliases:None
Description:poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565]
Organism:Human (Homo sapiens)
Coordinates:14:23790497..23795394(+)


>ENSG00000100836
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGG
AACTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCGAGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCC
CCGGGAGCTCCGGGCCCTGGGCCTGGTTCGGGAGCCCCCGGCAGCCAAGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGG
TGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTG
AGAAGCTAAAGGAGCTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCTCCAGGCAATGCTGGCCCGGTGATC
ATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGA
GCTGGAAGCTCACTTTCATGGCTGTGGTTCAGTCAACCGTGTTACCATACTGTGTGACAAATTTAGTGGCCATCCCAAAG
GGTTTGCGTATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGG
CAAATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTTCCACGAGCCCGCTACCG
CGCCCGGACCACCAACTACAACAGCTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGCGTCTACA
GGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA

Library Parental gene expression (RPM)
bodymap2_liver 28 .88 RPM
bodymap2_lung 71 .40 RPM
bodymap2_breast 52 .74 RPM
bodymap2_adipose 45 .06 RPM
bodymap2_adrenal 72 .67 RPM
bodymap2_skeletal_muscle 28 .26 RPM
bodymap2_thyroid 55 .21 RPM
bodymap2_prostate 68 .31 RPM
bodymap2_colon 51 .12 RPM
bodymap2_testis 71 .02 RPM
bodymap2_brain 32 .30 RPM
bodymap2_heart 21 .14 RPM
bodymap2_white_blood_cells 36 .58 RPM
bodymap2_lymph_node 118 .14 RPM
bodymap2_ovary 68 .20 RPM
bodymap2_kidney 65 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006884 ortholog_one2one 1 retrogene
retro_btau_693,
Callithrix jacchus ENSCJAG00000007960 ortholog_one2one 4 retrogenes
retro_cjac_1263, retro_cjac_2291, retro_cjac_3278, retro_cjac_3836,
Dipodomys ordii ENSDORG00000002873 ortholog_one2one 1 retrogene
retro_dord_606,
Gorilla gorilla ENSGGOG00000022683 ortholog_one2one 2 retrogenes
retro_ggor_1454, retro_ggor_3030,
Loxodonta africana ENSLAFG00000031227 possible_ortholog 2 retrogenes
retro_lafr_1031, retro_lafr_233,
Macaca mulatta ENSMMUG00000014747 possible_ortholog 1 retrogene
retro_mmul_2594,
Mustela putorius furo ENSMPUG00000006775 ortholog_one2one 1 retrogene
retro_mputfur_496,
Mus musculus ENSMUSG00000022194 possible_ortholog 1 retrogene
retro_mmus_403,
Nomascus leucogenys ENSNLEG00000015009 ortholog_one2one 2 retrogenes
retro_nleu_2066, retro_nleu_3023,
Oryctolagus cuniculus ENSOCUG00000016174 possible_ortholog 4 retrogenes
retro_ocun_1185, retro_ocun_1741, retro_ocun_1930, retro_ocun_365,
Otolemur garnettii ENSOGAG00000008710 ortholog_one2one 1 retrogene
retro_ogar_797,
Pongo abelii ENSPPYG00000005663 ortholog_one2one 2 retrogenes
retro_pabe_1645, retro_pabe_3773,
Pan troglodytes ENSPTRG00000006168 ortholog_one2one 2 retrogenes
retro_ptro_1339, retro_ptro_3232,
Sus scrofa ENSSSCG00000002023 ortholog_one2one 1 retrogene
retro_sscr_625,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4855 83.89 97.06
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Download FASTA sequences of all ENSG00000100836 retrocopies