RetrogeneDB ID: | retro_mmul_387 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:91344093..91345072(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COPS6 | ||
Ensembl ID: | ENSMMUG00000013440 | ||
Aliases: | None | ||
Description: | COP9 signalosome subunit 6 [Source:HGNC Symbol;Acc:21749] |
Percent Identity: | 95.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAAAAAGAATNGTGGSSGMEVDAAVVPSVMASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIGA |
MAAAAA.AATNG..GSSG.EVDAAVVPSVM.SGVTGSVSVALHPLVILNISD.WI.MRSQEGRPVQV.GA | |
Retrocopy | MAAAAAAAATNGSRGSSGTEVDAAVVPSVMPSGVTGSVSVALHPLVILNISDYWICMRSQEGRPVQVTGA |
Parental | LIGKQEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQ |
LIGKQEGRNIEVMN.FELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLG.YTTGGPPDPSDIHVHKQ | |
Retrocopy | LIGKQEGRNIEVMNYFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLG*YTTGGPPDPSDIHVHKQ |
Parental | VCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEEA-ERIGVDHVARMTATG |
VCEIIESPLFLK.NPMTKHTDLPVSVFES.IDII.GEATMLFAELTYTLATEEA.ERIGVDHVARMTATG | |
Retrocopy | VCEIIESPLFLKPNPMTKHTDLPVSVFESAIDIIKGEATMLFAELTYTLATEEA>ERIGVDHVARMTATG |
Parental | SGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFY |
SGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFY | |
Retrocopy | SGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFY |
Parental | DQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRMRGLFF |
DQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIG.RMR.LFF | |
Retrocopy | DQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGKRMRRLFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 75 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 106 .78 RPM |
SRP007412_cerebellum | 0 .26 RPM | 67 .48 RPM |
SRP007412_heart | 0 .06 RPM | 55 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 59 .62 RPM |
SRP007412_liver | 0 .08 RPM | 51 .78 RPM |
SRP007412_testis | 0 .11 RPM | 140 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014814 | 1 retrocopy | |
Felis catus | ENSFCAG00000003561 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000013440 | 1 retrocopy |
retro_mmul_387 ,
|
Macaca mulatta | ENSMMUG00000015010 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004170 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016843 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005186 | 1 retrocopy |