RetrogeneDB ID: | retro_mmul_417 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:134410400..134411039(+) | ||
Located in intron of: | ENSMMUG00000009987 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2373 | ||
Ensembl ID: | ENSMMUG00000011125 | ||
Aliases: | None | ||
Description: | 26S proteasome non-ATPase regulatory subunit 7 [Source:RefSeq peptide;Acc:NP_001244743] |
Percent Identity: | 75.93 % |
Parental protein coverage: | 66.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMF |
P..LLSVVDHFNRI.KVG.QK....VLL.SWQ.KVLDVS.S.AVPF.EDD.DD...FL.HDYLEN.Y.MF | |
Retrocopy | PGILLSVVDHFNRISKVGKQKCILHVLLQSWQMKVLDVSSSSAVPFNEDDTDDC--FLAHDYLENTYRMF |
Parental | KKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS |
K..NARER.VGWYH.GPKLHKND.A.NE.MKRYC.NSVLV..D.KPKDLGLP.EAYIS..E..DDGT... | |
Retrocopy | KRMNARERTVGWYHIGPKLHKNDTAFNEIMKRYCHNSVLVTSDMKPKDLGLPIEAYIS-GEIYDDGTSAL |
Parental | KTFEHVTSEIGAEEAEEVGVE-HLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLP |
KTFEHVTSE.GAEEA.E.GV..HLL.DIKDTTVGTLSQ.ITNQV..LKGLNSKLL.IRSYLEKV.TGKL. | |
Retrocopy | KTFEHVTSETGAEEAKEIGVPFHLLQDIKDTTVGTLSQWITNQVLDLKGLNSKLLGIRSYLEKVGTGKLS |
Parental | INHQII |
.NHQII | |
Retrocopy | TNHQII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 37 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 40 .62 RPM |
SRP007412_cerebellum | 0 .13 RPM | 31 .00 RPM |
SRP007412_heart | 0 .18 RPM | 26 .68 RPM |
SRP007412_kidney | 0 .82 RPM | 28 .87 RPM |
SRP007412_liver | 0 .08 RPM | 26 .56 RPM |
SRP007412_testis | 0 .23 RPM | 46 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_234 |
Pan troglodytes | retro_ptro_205 |
Pongo abelii | retro_pabe_418 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015129 | 2 retrocopies | |
Homo sapiens | ENSG00000103035 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000013440 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015010 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005608 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014868 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014356 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025918 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008343 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000016950 | 1 retrocopy |