RetrogeneDB ID: | retro_mmul_54 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:48865863..48866385(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000005015 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAD1 | ||
Ensembl ID: | ENSMMUG00000030184 | ||
Aliases: | None | ||
Description: | cell cycle checkpoint protein RAD1 [Source:RefSeq peptide;Acc:NP_001248089] |
Percent Identity: | 95.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQI |
MCYQGYGYPL.LFLEEGGVVTVCKINTQ.PE.TLDFDFCSTNVINKIILQSEGLREAFSELDM.SEVLQI | |
Retrocopy | MCYQGYGYPLRLFLEEGGVVTVCKINTQDPEDTLDFDFCSTNVINKIILQSEGLREAFSELDMMSEVLQI |
Parental | TMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRG |
TMS.DKPYFRLSTFGNA.SSHLDYPKDSDLMEAFHCNQ.QVNRYKISLLKPSTKALVLSCKVSIRTDNRG | |
Retrocopy | TMSLDKPYFRLSTFGNARSSHLDYPKDSDLMEAFHCNQIQVNRYKISLLKPSTKALVLSCKVSIRTDNRG |
Parental | FLSLQYMIRNEDGQICFVEYYCCPDEEVPES |
FLS.QYMIRNEDGQICFVEYYCCPDEEVPES | |
Retrocopy | FLSSQYMIRNEDGQICFVEYYCCPDEEVPES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 5 .71 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .84 RPM |
SRP007412_cerebellum | 0 .19 RPM | 5 .81 RPM |
SRP007412_heart | 0 .06 RPM | 2 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .99 RPM |
SRP007412_liver | 0 .00 RPM | 1 .58 RPM |
SRP007412_testis | 0 .08 RPM | 6 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018514 | 1 retrocopy | |
Homo sapiens | ENSG00000113456 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004219 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000030184 | 1 retrocopy |
retro_mmul_54 ,
|
Nomascus leucogenys | ENSNLEG00000014437 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014822 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015389 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016783 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002894 | 1 retrocopy |