RetrogeneDB ID: | retro_mmul_638 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:58355463..58356505(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIPAL1 | ||
Ensembl ID: | ENSMMUG00000018625 | ||
Aliases: | None | ||
Description: | NIPA-like domain containing 1 [Source:HGNC Symbol;Acc:27194] |
Percent Identity: | 79.38 % |
Parental protein coverage: | 85.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | SQLLASPVLYTDLNSSINNLSISANVENKYSLYVGLVLAVSSSIFIGSSFILKKKGLLQLASKGVTRAGQ |
S...ASPVLYTDLNSSI.NLSISANVENKYSLYVG.VLAV.SSIFIGSSFILKKKGLLQL..KGVTRAGQ | |
Retrocopy | SATAASPVLYTDLNSSITNLSISANVENKYSLYVG*VLAVTSSIFIGSSFILKKKGLLQLVKKGVTRAGQ |
Parental | GGHSYLKE-WLWWVGLLSM-GAGEAANFAAYAFAPATL--VTPLGALSVLISAILSSYFLNEHLNIHGKI |
GGHS.LK..WL...G.L.M.G......F....F....L....P.G.LSVL.SAILSSYFLNEHLNI.GK. | |
Retrocopy | GGHSDLKD<WL*GAGVLAM<GSRRGCTFCGLCFCTCHLGHPHPPGPLSVLVSAILSSYFLNEHLNIYGKT |
Parental | GCILSILGSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISI |
GC...ILGSTVMVIH.PQEEEVTSLHEMEMKLRDPGFISFAVII.VI.LVLILIVAPKKGQ.NILVYISI | |
Retrocopy | GC---ILGSTVMVIHPPQEEEVTSLHEMEMKLRDPGFISFAVIIIVIFLVLILIVAPKKGQINILVYISI |
Parental | CSLIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSLVTPIYYV |
CSL.GAFSVSS.KGLGIAIKEL.EWK.V.KHPLV.VLLA.LVL.VTTQINYL.KALDT..TS.VTPIY.. | |
Retrocopy | CSLTGAFSVSSAKGLGIAIKELLEWKTV*KHPLVTVLLAILVLLVTTQINYL-KALDTVTTSPVTPIYFA |
Parental | FFTSMVVTCSAVLFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTDITWSELTSTAKKEAISLNVNE |
FFTSMVVTCSA.L.Q.WYGM.AGDII.TLSGFFTII.GIFLLHAFKNTDIT.S.LTSTAKKE.ISLN.NE | |
Retrocopy | FFTSMVVTCSAILLQGWYGMKAGDIIKTLSGFFTIIFGIFLLHAFKNTDITRSKLTSTAKKEVISLNGNE |
Parental | NNYV |
.N.V | |
Retrocopy | SNPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .59 RPM | 1 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 2 .11 RPM |
SRP007412_liver | 0 .00 RPM | 3 .44 RPM |
SRP007412_testis | 0 .23 RPM | 0 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000002047 | 1 retrocopy | |
Homo sapiens | ENSG00000163293 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009006 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003892 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018625 | 1 retrocopy |
retro_mmul_638 ,
|
Nomascus leucogenys | ENSNLEG00000017377 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014714 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016038 | 1 retrocopy |