RetrogeneDB ID: retro_mmur_1429

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_58601:962..1159(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000017448
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SERP1
• Ensembl ID: ENSMICG00000000414
• Aliases: None
• Description: stress-associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:10759]

Sequence

>retro_mmur_1429
ATGGTCGCCAAACAGCGGATCCGTATGGCCAACGAGAAGCACAGCAAGAACGTCACCCAGCGCGGCAACGTCGCCAAGAC
CTCGAGAAATGCCCCCCGAGAGAAGGCGTCTGTAGGACCCTGGTTATTGGCTCTCTTCGTTTTTGTTGTTTGTGGCTCTG
CAATTTTCCAGATTATCAAAGTATCAGGATGGGCATG

Alignment

ORF - retro_mmur_1429 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.03 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVAKQRIRMANEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQII-QSIRMGM
          MVAKQRIRMANEKHSKN.TQRGNVAKTSRNAP.EKASVGPWLLALF.FVVCGSAIFQII.QSIRMGM
Retrocopy MVAKQRIRMANEKHSKNVTQRGNVAKTSRNAPREKASVGPWLLALFVFVVCGSAIFQII<QSIRMGM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1429 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1429 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000013995	15 retrocopies	retro_dnov_1100, retro_dnov_1145, retro_dnov_1170, retro_dnov_1416, retro_dnov_1500, retro_dnov_1524, retro_dnov_1533, retro_dnov_1649, retro_dnov_1715, retro_dnov_1724, retro_dnov_1746, retro_dnov_1784, retro_dnov_1847, retro_dnov_2299, retro_dnov_856,
Microcebus murinus	ENSMICG00000000414	1 retrocopy	retro_mmur_1429 ,
Oryctolagus cuniculus	ENSOCUG00000016085	2 retrocopies	retro_ocun_1542, retro_ocun_1835,