RetrogeneDB ID:

retro_mmur_642

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_4374:208658..208970(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PTP4A3
Ensembl ID:ENSMICG00000006858
Aliases:None
Description:protein tyrosine phosphatase type IVA, member 3 [Source:HGNC Symbol;Acc:9636]


Retrocopy-Parental alignment summary:






>retro_mmur_642
GACTGGCCTTTTGATGATGGTGCACCACCGTCTAACCAGATTGTTGATGACTGGTTAAGTCTTGTAAAAATCAAGTTTCG
TGAAGAACCTGGTTGTTGTATTGCTGTTCATTGTGTTGCAGGCCTTGGGAGAGCTCCAGTGCTTGTTGCTCTCGCATTAA
TCGAAGGTGGAATGAAACATGAAGATGCAGTACAATTCATAAGACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTT
TTGTATTTGGAGAAGTATCGTCCTAAGATGCGGCTGCGCTTCAAAGACTCCAATGGTCATAGAAACAACTGT

ORF - retro_mmur_642 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.88 %
Parental protein coverage: 97.2 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDWPFDDGAPPPGKVVEDWLSLLKAKFCEDPGSCVAVHCVAGLGRAPVLVALALIESGMKYEDAIQFIRQK
DWPFDDGAPP....V.DWLSL.K.KF.E.PG.C.AVHCVAGLGRAPVLVALALIE.GMK.EDA.QFIRQK
RetrocopyDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKHEDAVQFIRQK
ParentalRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTKC
RRGA.NSKQL.YLEKYRPK.RLRFKD...H...C
RetrocopyRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_642 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_642 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000464671 retrocopy
Gorilla gorilla ENSGGOG000000106091 retrocopy
Microcebus murinus ENSMICG000000014245 retrocopies
Microcebus murinus ENSMICG00000006858 4 retrocopies
Macaca mulatta ENSMMUG000000193921 retrocopy



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