RetrogeneDB ID: | retro_mmur_910 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_125728:605..882(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSMICG00000001424 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
Percent Identity: | 56.57 % |
Parental protein coverage: | 58.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRA-PVLVALALIECGMKYEDAVQFIRQ |
.WP.D..APP.N.IVD......K.KFREEP.CCVAV..VAGLGRA.PVL..L..I..GMKYE.AVQF.RQ | |
Retrocopy | NWPLD--APPSNHIVD--VSFVKIKFREEPDCCVAVQYVAGLGRA<PVLAVLV*IASGMKYEEAVQFVRQ |
Parental | KRRGAFNSKQLLYLEK-YRPKMRLRFRDT |
.R.GAFNS.........Y.PK..L.F... | |
Retrocopy | QRHGAFNSNFSVWRSS<YPPKIWLCFKNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017806 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010834 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002037 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001424 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000006858 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000012930 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000467 | 4 retrocopies |