RetrogeneDB ID: retro_mmur_948

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_14010:12679..13145(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HRAS
• Ensembl ID: ENSMICG00000006472
• Aliases: None
• Description: Harvey rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:5173]

Sequence

>retro_mmur_948
ATGTCTGAGTACAAACTGGTGGTGGTTGGAGCAGGTGGTGTTGGGAAAAGCGCACTGACAATCCAGCTAATCCAGAACCA
CTTTGTAGATGAATATGATCCCACCATAGAGGATTCTTACCAAAAACAGGTGGTTATAGATGGTGAAACCTGTCTGTTGG
ACATACTGGATACAGCTGGACAAGAGGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCAAAGGCTTCCTCTGT
GTATTTGCCATCAATAATAGCAAGTCATTTGCAGATATTAACCTCTACAGGGAGCAGATTAAGCAAATAAAAGATTCAGA
TGATGTACCTATGGTGCTGGTAGGAAACAAGTGTGATTTGCCAACAAGGAGAGTTGACACAAAACAAGCCCATGAGCTGG
CCAAGAGTTACGGGATTCCATTTATTGAAACCTCAGCCAAGACCAGACAGGGTGTCGAAGATGCCT

Alignment

ORF - retro_mmur_948 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.26 %
• Parental protein coverage: 71.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ
          M.EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY.KQVVIDGETCLLDILDTAGQEEYSAMRDQ
Retrocopy MSEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYQKQVVIDGETCLLDILDTAGQEEYSAMRDQ

Parental  YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYSIP
          YMRTG.GFLCVFAINN.KSF.DI..YREQIK..KDSDDVPMVLVGNKCDL..R.V...QA..LA.SY.IP
Retrocopy YMRTGKGFLCVFAINNSKSFADINLYREQIKQIKDSDDVPMVLVGNKCDLPTRRVDTKQAHELAKSYGIP

Parental  YIETSAKTRQ-VSRLP
          .IETSAKTRQ.VS..P
Retrocopy FIETSAKTRQ>VSKMP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_948 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_948 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015293	3 retrocopies	retro_dnov_1358, retro_dnov_154, retro_dnov_2354,
Echinops telfairi	ENSETEG00000019899	2 retrocopies	retro_etel_1028, retro_etel_391,
Macropus eugenii	ENSMEUG00000008467	1 retrocopy	retro_meug_852,
Microcebus murinus	ENSMICG00000006472	1 retrocopy	retro_mmur_948 ,
Microcebus murinus	ENSMICG00000013148	1 retrocopy	retro_mmur_116,
Rattus norvegicus	ENSRNOG00000016611	1 retrocopy	retro_rnor_2941,