RetrogeneDB ID: | retro_dnov_1358 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_186339:3594..4110(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HRAS | ||
Ensembl ID: | ENSDNOG00000015293 | ||
Aliases: | None | ||
Description: | Harvey rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:5173] |
Percent Identity: | 67.05 % |
Parental protein coverage: | 92.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | VVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE |
VVGAGG.GKS.LT.QLI.NH..VDEYDP.IEDSYRKQVVI.GETCLLDILDTA.QEEYSAMR.QY...GE | |
Retrocopy | VVGAGGAGKSVLTSQLIENHL<VDEYDPAIEDSYRKQVVIYGETCLLDILDTA*QEEYSAMRGQYI--GE |
Parental | GFLCVFAINNTKSFEDIHQYRE-QIKRVKDSDDVPMVLVGNKCDLPARTVDARQAQELACSYGLPYVETS |
GFLCVFA.NN..SF.....Y...QIK..KDSDDVP....GNKCDLP.R.VD..Q..EL..SY.....ETS | |
Retrocopy | GFLCVFAFNNSNSFANNNLYKV>QIK*FKDSDDVPIAPAGNKCDLPTRSVDTKQTHELDKSYRFAFIETS |
Parental | AKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGC |
AKTR.G.ED.FYTLVREI......KLN..D....GC | |
Retrocopy | AKTREGIEDDFYTLVREIH*Y*MKKLNSSDSGAQGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 11 .67 RPM |
SRP012922_cerebellum | 0 .00 RPM | 17 .73 RPM |
SRP012922_heart | 0 .00 RPM | 7 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 23 .00 RPM |
SRP012922_liver | 0 .00 RPM | 8 .20 RPM |
SRP012922_lung | 0 .00 RPM | 17 .72 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 37 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 9 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000007809 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015293 | 3 retrocopies |
retro_dnov_1358 , retro_dnov_154, retro_dnov_2354,
|
Dasypus novemcinctus | ENSDNOG00000017413 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019724 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000019899 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000008467 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006472 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016611 | 1 retrocopy |