RetrogeneDB ID: | retro_dnov_154 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_2159:57354..57852(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000025364 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HRAS | ||
Ensembl ID: | ENSDNOG00000015293 | ||
Aliases: | None | ||
Description: | Harvey rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:5173] |
Percent Identity: | 80.72 % |
Parental protein coverage: | 87.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED |
LIQNHFVDEYDPTIEDSYRK.VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN.KSF.D | |
Retrocopy | LIQNHFVDEYDPTIEDSYRKKVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD |
Parental | IHQYREQIKRVKDSDDVPMVLVGNKCDLPARTVDARQAQELACSYGLPYVETSAKTRQGVEDAFYTLVRE |
I..YREQIKRVKDSDDVPMVLVGN.CDLP.RTVD..QA.ELA.SYG.P..ETSAKTRQGVE.AFYTLVRE | |
Retrocopy | INLYREQIKRVKDSDDVPMVLVGNRCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEEAFYTLVRE |
Parental | IRQHKLRKLNPPDESGPGCADCKCTL |
I.Q....KLN..D....GC....C.. | |
Retrocopy | IHQYRMKKLNSNDDGTQGCMGLPCVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 23 .53 RPM | 11 .67 RPM |
SRP012922_cerebellum | 4 .12 RPM | 17 .73 RPM |
SRP012922_heart | 1 .62 RPM | 7 .19 RPM |
SRP012922_kidney | 7 .67 RPM | 23 .00 RPM |
SRP012922_liver | 6 .66 RPM | 8 .20 RPM |
SRP012922_lung | 9 .62 RPM | 17 .72 RPM |
SRP012922_quadricep_muscle | 2 .77 RPM | 37 .73 RPM |
SRP012922_spleen | 12 .82 RPM | 9 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000007809 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015293 | 3 retrocopies |
retro_dnov_1358, retro_dnov_154 , retro_dnov_2354,
|
Dasypus novemcinctus | ENSDNOG00000017413 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019724 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000019899 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000008467 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006472 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016611 | 1 retrocopy |