>retro_mmus_1006
CCTGCAGCTGTGGCAGGCCGACCGCCGAAGGCCCCAGAGAACTTCTCTCAAAACTTGAAGGCGCTGCAAGAGCTGCTTAA
ACAAAAGTCACAGGCCCCAGAAAAACCTCTTGTCTCTCAGATGGATGACAAAATGCATCCCCAAATAATCCCGCAGAACA
GAAAAAGAGGCCTCAGATAAATCAAAGGGAGACAAGAAGTGGTCAGAAAAAGACAAGAGCACTAAGGGTTCTGTTACATC
TGCACCTAAGGACAGGAAGATGCTAGTACCTCCCACAGATACCTCTGGAACAGAGCCGTAGAAAGGACCCAAGAAGAGGA
CATATAGTGACATCTTTTCTCATCAAGAGGATCTCAAACCTAAGTGGAAAGCTACGGAGGCAGCTGTCATCTTGAATCAG
CCCACGCCCACTGAGGGAGACATCTGGTTTGATGATGTGGATGCAGATGATACTGAGGCTGCCATAGGGTCAGAGGCAGC
CATGCCGGTACAGAAGAGACTGCGCAGAGCGAGAGTACCATCTCCCTGGTGAAGGAACAAGCCTTTAGCGGCCTGACAAA
AGCCTTGGCCCTGGATTGTGAGATGGTAGGCGAGGGCCCCAAAGGAGAAGAAGGCATCATCGAAGCCGGTGTGTCCATCG
TGAACCAGTATGGGAAGTGCGTCTATGACAAGTACGTCAAGCCAACTGAGCCAGTGACTGACTATGGGACAGCCGTCAGT
GGGATCCAGCCTGAGAACCTGAAGCAGGGAGCAGAGTTTGAAGTTATGGAGAAGGAAATGGCAGAAATGTTGAACGGCAA
AATCCTGGTGGGGCACGCGCTACACAATGATTTAAAGGTTCTGTTTCTTGACCACCACCAACACCCCCCCAAAGAAAATC
AGGAACACCCAAAAATTCAAACCATTCCAGAGTCCAGTAAAGAGT
ORF - retro_mmus_1006 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.64 % |
Parental protein coverage: |
70.37 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | PAAVAGRPPKAPENFSQNWKALQELLKQKSQAAEKPLVSQMDDKMHPQIIQQNRKK-ASDKSKGDKQRTE |
| PAAVAGRPPKAPENFSQN.KALQELLKQKSQA.EKPLVSQMDDKMHPQII.QNRK..ASDKSKGDK...E |
Retrocopy | PAAVAGRPPKAPENFSQNLKALQELLKQKSQAPEKPLVSQMDDKMHPQIIPQNRKR>ASDKSKGDKKWSE |
|
Parental | KAKSTRGSVTSAPTDRKILVPPTDTSGTEQKKGAKKRTYSDISSHQGALKPKWKATEAAVILNQPTPTEE |
| K.KST.GSVTSAP.DRK.LVPPTDTSGTE..KG.KKRTYSDI.SHQ..LKPKWKATEAAVILNQPTPTE. |
Retrocopy | KDKSTKGSVTSAPKDRKMLVPPTDTSGTEP*KGPKKRTYSDIFSHQEDLKPKWKATEAAVILNQPTPTEG |
|
Parental | DIWFDDVDPDDIEDAIGPEAAMLVRKRL-GQKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEES-IA |
| DIWFDDVD.DD.E.AIG.EAAM.V.KRL..Q...TISL.KEQAF.GLTKALALDCEMVG.GPKGEE..I. |
Retrocopy | DIWFDDVDADDTEAAIGSEAAMPVQKRL<AQSESTISLVKEQAFSGLTKALALDCEMVGEGPKGEEGIIE |
|
Parental | ARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEMLKGRILVGHALHNDL |
| A.VSIVNQYGKCVYDKYVKPTEPVTDY.TAVSGI.PENLKQG.EFEV..KE.AEML.G.ILVGHALHNDL |
Retrocopy | AGVSIVNQYGKCVYDKYVKPTEPVTDYGTAVSGIQPENLKQGAEFEVMEKEMAEMLNGKILVGHALHNDL |
|
Parental | KVLFLDH---PKKK-IRDTQKFKPFRSRVKS |
| KVLFLDH...P.K..IR.TQKFKPF.S.VKS |
Retrocopy | KVLFLDHHQHPPKE>IRNTQKFKPFQSPVKS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
42 .73 RPM |
SRP007412_cerebellum |
0 .00 RPM |
56 .62 RPM |
SRP007412_heart |
0 .00 RPM |
15 .10 RPM |
SRP007412_kidney |
0 .00 RPM |
27 .78 RPM |
SRP007412_liver |
0 .00 RPM |
27 .72 RPM |
SRP007412_testis |
0 .00 RPM |
18 .62 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_1006 was not detected
No EST(s) were mapped for retro_mmus_1006 retrocopy.
No TSS is located nearby retro_mmus_1006 retrocopy 5' end.
retro_mmus_1006 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_1006 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.