RetrogeneDB ID: | retro_mmus_1061 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:110119490..110119790(+) | ||
Located in intron of: | ENSMUSG00000021700 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lamtor5 | ||
Ensembl ID: | ENSMUSG00000087260 | ||
Aliases: | Lamtor5, 1110003H18Rik, Hbxip, XIP | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:MGI Symbol;Acc:MGI:1915826] |
Percent Identity: | 85. % |
Parental protein coverage: | 68.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PGLGRTACGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLSDEHAGVISVLAQQAARLTSDPTD |
PGLG.TAC.MEATLEQ.LEDT..NP.IVGVLCTDSQGLNLG..GTLS.EHAG.ISVLAQQA..LTSDPT. | |
Retrocopy | PGLGQTACEMEATLEQDLEDTERNPPIVGVLCTDSQGLNLG*HGTLSNEHAGLISVLAQQASKLTSDPTH |
Parental | IPVVCLESDNGNIMIQKHDGITVAVHKMAS |
IPVVCLESDNGNIMI.KH.GITVAVHKMAS | |
Retrocopy | IPVVCLESDNGNIMI*KHYGITVAVHKMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 17 .45 RPM |
SRP007412_cerebellum | 0 .22 RPM | 17 .89 RPM |
SRP007412_heart | 0 .00 RPM | 20 .92 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .03 RPM |
SRP007412_liver | 0 .00 RPM | 12 .10 RPM |
SRP007412_testis | 0 .00 RPM | 11 .71 RPM |