RetrogeneDB ID: | retro_mmus_1274 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:50645383..50645666(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgn1 | ||
Ensembl ID: | ENSMUSG00000040681 | ||
Aliases: | None | ||
Description: | high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120] |
Percent Identity: | 55.67 % |
Parental protein coverage: | 97.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KRKVSADGAA-KAEPKRRSARLSAKPAPAKVDAK-PKKAAGKDKASDKKVQIKGKRGAKGKQADVADQQT |
KRK.S......K.EPK..S.RLSAKP.PA.......K...GK.K.SDKKVQ.KGKRGA.GKQ..VADQ.T | |
Retrocopy | KRKFSSEAGG>KLEPKHCSLRLSAKPSPANENID>SKQVSGKAKSSDKKVQTKGKRGAQGKQV*VADQ*T |
Parental | TELPAENG-ETENQSPASEEEKEAKSD |
T.LP...G..TENQ.P.S.E...A..D | |
Retrocopy | TDLPSDSG<GTENQTPFSGEXXXAMDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 27 .59 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .14 RPM |
SRP007412_heart | 0 .00 RPM | 21 .23 RPM |
SRP007412_kidney | 0 .02 RPM | 50 .01 RPM |
SRP007412_liver | 0 .00 RPM | 36 .43 RPM |
SRP007412_testis | 0 .00 RPM | 25 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000002336 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000020972 | 5 retrocopies | |
Mus musculus | ENSMUSG00000040681 | 13 retrocopies | |
Rattus norvegicus | ENSRNOG00000048226 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000050978 | 5 retrocopies |