RetrogeneDB ID: | retro_cpor_1129 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:134344..134594(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000002336 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.05 % |
Parental protein coverage: | 82.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PKRRSARLSAKPAPAKVETKPKKA-AGKDKSVDKKVQPKGKRGAKGKQAEAAHQEAKEDLPAENGEAKNA |
PKRRSARL.AK....K....PKK..AGKD.S.DKKVQ.KGKRGAKGK.A..A.QE.KEDLPAENGE.K.. | |
Retrocopy | PKRRSARLLAKLLLKKWK*SPKKG>AGKDISLDKKVQVKGKRGAKGKGADIANQETKEDLPAENGETKKE |
Parental | ESAASDEAEEKEAK |
E..AS.E.EEKEAK | |
Retrocopy | EITASNEVEEKEAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 83 .33 RPM |
SRP017611_liver | 0 .00 RPM | 23 .72 RPM |
SRP040447_lung | 0 .00 RPM | 86 .23 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 18 .93 RPM |