RetrogeneDB ID: | retro_mmus_1622 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:17345458..17346140(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000043801 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Oaz1 | ||
Ensembl ID: | ENSMUSG00000035242 | ||
Aliases: | Oaz1, AZ-1, AZ1, Antizyme, ODC-Az, Oaz | ||
Description: | ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433] |
Percent Identity: | 99.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVKSSLQRILNSHCFAREKEGDKRSATLHASRTMPLLSQHSRGGCSSESSRVALNCCSNLGPGPRWCS-D |
MVKSSLQRILNSHCFAREKEGDKRSATLHASRTMPLLSQHS.GGCSSESSRVALNCCSNLGPGPRWCS.D | |
Retrocopy | MVKSSLQRILNSHCFAREKEGDKRSATLHASRTMPLLSQHSPGGCSSESSRVALNCCSNLGPGPRWCS>D |
Parental | VPHPPLKIPGGRGNSQRDHSLSASILYSDERLNVTEEPTSNDKTRVLSIQSTLTEAKQVTWRAVWSGGGL |
VPHPPLKIPGGRGNSQRDHSLSASILYSDERLNVTEEPTSNDKTRVLSIQSTLTEAKQVTWRAVWSGGGL | |
Retrocopy | VPHPPLKIPGGRGNSQRDHSLSASILYSDERLNVTEEPTSNDKTRVLSIQSTLTEAKQVTWRAVWSGGGL |
Parental | YIELPAGPLPEGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRPGHPLVPKRP |
YIELPAGPLPEGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRPGHPLVPKRP | |
Retrocopy | YIELPAGPLPEGSKDSFAALLEFAEEQLQADHVFICFPKNREDRAALLRTFSFLGFEIVRPGHPLVPKRP |
Parental | DACFMVYTLEREDPGEED |
DACFMVYTLEREDPGEED | |
Retrocopy | DACFMVYTLEREDPGEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .33 RPM | 37 .87 RPM |
SRP007412_cerebellum | 0 .30 RPM | 60 .66 RPM |
SRP007412_heart | 1 .31 RPM | 102 .32 RPM |
SRP007412_kidney | 0 .81 RPM | 73 .36 RPM |
SRP007412_liver | 0 .57 RPM | 80 .15 RPM |
SRP007412_testis | 0 .18 RPM | 47 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000016529 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000017945 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004446 | 2 retrocopies | |
Mus musculus | ENSMUSG00000035242 | 1 retrocopy |
retro_mmus_1622 ,
|
Mus musculus | ENSMUSG00000040652 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002179 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009345 | 1 retrocopy |