RetrogeneDB ID: | retro_mmus_2145 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:30974696..30975112(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl24 | ||
Ensembl ID: | ENSMUSG00000022601 | ||
Aliases: | Zbtb11, 9230110G02Rik, ZNF-U69274 | ||
Description: | ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1915443] |
Percent Identity: | 70.42 % |
Parental protein coverage: | 88.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | RRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRT-RRAVKFQRAITGASL |
R.Y.RTD..VFQFLNAKCES.F..KRNPRQINWTVLYRRK.K....EEIQKKRT.RR.VKFQ.A..G.S. | |
Retrocopy | RCYSRTD*TVFQFLNAKCESVFTFKRNPRQINWTVLYRRKRKDSRKEEIQKKRT<RRVVKFQLADNGVSF |
Parental | ADIMAKRNQKPEVRKAQR-EQAIRAAKEAKK-AKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGG |
A.I.AK.NQK..VRK......AIRA.KE.K..AKQASKKTAMAAA..PTKA.PK.K.V.PV.VSAP.VGG | |
Retrocopy | AAITAKKNQKLDVRKLSE<KRAIRAVKETKR>AKQASKKTAMAAAGVPTKATPK*KPVRPVEVSAP*VGG |
Parental | KR |
KR | |
Retrocopy | KR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 83 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 81 .85 RPM |
SRP007412_heart | 0 .00 RPM | 59 .33 RPM |
SRP007412_kidney | 0 .02 RPM | 59 .77 RPM |
SRP007412_liver | 0 .00 RPM | 60 .76 RPM |
SRP007412_testis | 0 .00 RPM | 67 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_1643 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Mus musculus | ENSMUSG00000022601 | 13 retrocopies |