RetrogeneDB ID:

retro_mmus_87

Retrocopy
location
Organism:Mouse (Mus musculus)
Coordinates:18:9726196..9726670(-)
Located in intron of:ENSMUSG00000036103
Retrocopy
information
Ensembl ID:ENSMUSG00000091285
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Rpl24
Ensembl ID:ENSMUSG00000022601
Aliases:Zbtb11, 9230110G02Rik, ZNF-U69274
Description:ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1915443]


Retrocopy-Parental alignment summary:






>retro_mmus_87
ACCAGGGTCGAGCTGTGCAGTTCCAGCATGTACAAGATCTACCCGGGACACGGGCGGCACTACTCCAGGACCAACGGGAA
GGTTTTCCAGTTTCTAAATGCAAAATGTGAGTCTGCATTCTTTTCCAAAAGGAATACTCTGCAGATAAACTGGATTGTCC
TCTACAGAAGAAAACACAAGAAAGGGCAGTCGGAAGAAATTCAAAAGAAAAGAACCCGCCGTGCAGTCAAAGTCCATCGA
GCCATCACTGGTGCGTCTCCTGCTGATATAATGGCCAAGTGGAATCAGAAGCCAGAGGTTAGGAAAGCCCAACGGGAGCA
GGCTATCGGGGCTGCCAAGGAAGTAAAAAAGGCTAAGCAGGCATCAAAGAAGACAGCAATGGCTGCTGCCAAGGCCACCA
CAAAGGCAGCACCCAGACAAAAGATTGTGAAGCCTGTGAAGGTCTCCGCCCCCAGAGTTGGTGGGAAATGCTAA

ORF - retro_mmus_87 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.39 %
Parental protein coverage: 98.73 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKR
.VELCS.S.YKIYPGHGR.Y.RT.GKVFQFLNAKCESAF.SKRN..QINW.VLYRRKHKKGQSEEIQKKR
RetrocopyRVELCSSSMYKIYPGHGRHYSRTNGKVFQFLNAKCESAFFSKRNTLQINWIVLYRRKHKKGQSEEIQKKR
ParentalTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQK
TRRAVK..RAITGAS.ADIMAK.NQKPEVRKAQREQAI.AAKE.KKAKQASKKTAMAAAKA.TKAAP.QK
RetrocopyTRRAVKVHRAITGASPADIMAKWNQKPEVRKAQREQAIGAAKEVKKAKQASKKTAMAAAKATTKAAPRQK
ParentalIVKPVKVSAPRVGGK
IVKPVKVSAPRVGGK
RetrocopyIVKPVKVSAPRVGGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .02 RPM 83 .94 RPM
SRP007412_cerebellum 0 .00 RPM 81 .85 RPM
SRP007412_heart 0 .25 RPM 59 .33 RPM
SRP007412_kidney 0 .06 RPM 59 .77 RPM
SRP007412_liver 0 .16 RPM 60 .76 RPM
SRP007412_testis 0 .05 RPM 67 .05 RPM
RNA Polymerase II actvity near the 5' end of retro_mmus_87 was not detected
No EST(s) were mapped for retro_mmus_87 retrocopy.
No TSS is located nearby retro_mmus_87 retrocopy 5' end.
retro_mmus_87 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmus_87 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 1 parental gene, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Mus musculus ENSMUSG00000022601 13 retrocopies



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