>retro_mmus_2981 AAGATCTACCCGGGACATGGGCGGCACTATGCCAGCACCTACGAGAAGATTTTCCAGTTTCTTAATGCAAAATGTGAGTC
CGCATTCCTTTCCAAAAGGAATCCTAGGCAAATAAACTGGACTGTCCTCTACAGAAGAAAACACAAGAAAGGGCAGTTGG
AAGAAATTCAAAAGAAAAGAACCTGCCGTGCAGTCAAATTCCAACAAGCCATCATTGGTGCATCTCTTGCTGATATAATG
GCCAAGAGGAATCAGAAACCAGAGGTTAAGAAAGCCCAGTGAGAGCAGGCTATCAGGGCTGCCAAGGAAGCAAAAGAGGC
TAAGCAGGCATCAAAGAAGACAGCAATGGCTGCTGCCAAGGCCCCCACAAAGGCAGCACCTAAACAAAAGATTGTGAAGC
CTGTGAAGGTCTCTGCCCCCAGAGTTGGTGGGAAA
ORF - retro_mmus_2981 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity:
91.72 %
Parental protein coverage:
92.36 %
Number of stop codons detected:
1
Number of frameshifts detected
0
Retrocopy - Parental Gene Alignment:
Parental KIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRA
KIYPGHGR.YA.T..K.FQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQ.EEIQKKRT.RAVKFQ.A
Retrocopy KIYPGHGRHYASTYEKIFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQLEEIQKKRTCRAVKFQQA Parental ITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP
I.GASLADIMAKRNQKPEV.KAQ.EQAIRAAKEAK.AKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP
Retrocopy IIGASLADIMAKRNQKPEVKKAQ* EQAIRAAKEAKEAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP Parental RVGGK
RVGGK
Retrocopy RVGGK
Legend:
* Stop codon
> Forward frameshift by one nucleotide
< Reverse frameshift by one nucleotide
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library
Retrocopy expression
Parental gene expression
SRP007412_brain
0 .02 RPM
83 .94 RPM
SRP007412_cerebellum
0 .09 RPM
81 .85 RPM
SRP007412_heart
0 .00 RPM
59 .33 RPM
SRP007412_kidney
0 .02 RPM
59 .77 RPM
SRP007412_liver
0 .00 RPM
60 .76 RPM
SRP007412_testis
0 .00 RPM
67 .05 RPM
RNA Polymerase II actvity near the 5' end of retro_mmus_2981 was not detected
No EST(s) were mapped for retro_mmus_2981 retrocopy.
TSS No.
TSS Name
TSS expression level (Expr) in TPM range:
no expression
0 < Expr ≤ 1
1 < Expr ≤ 5
5 < Expr ≤ 10
Expr > 10
TSS #1
TSS_130242 78 libraries 108 libraries 660 libraries 148 libraries 78 libraries
The graphical summary, for retro_mmus_2981
TSS expression levels > 0 TPM .
TSS expression levels were studied across 1072 TSS-CAGE libraries, based on FANTOM5 data.
The expression values were visualized using beanplot. If you have any doubts, how to read it, read more in Kampstra P (2008)
retro_mmus_2981 was not experimentally validated.
Retrocopy orthology: Retrocopy retro_mmus_2981 has 0 orthologous retrocopies within eutheria group .
Parental genes homology: Parental genes homology involve
1 parental gene, and
13 retrocopies.
Species
Parental gene accession
Retrocopies number
Mus musculus ENSMUSG00000022601 13 retrocopies
Show / hide list of retrocopies
retro_mmus_1398 ,
retro_mmus_1418 ,
retro_mmus_1555 ,
retro_mmus_2145 ,
retro_mmus_2429 ,
retro_mmus_2434 ,
retro_mmus_2870 ,
retro_mmus_2981 ,
retro_mmus_3208 ,
retro_mmus_3384 ,
retro_mmus_500 ,
retro_mmus_793 ,
retro_mmus_87 ,