RetrogeneDB ID: | retro_mmus_3276 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:56021567..56022176(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lztfl1 | ||
Ensembl ID: | ENSMUSG00000025245 | ||
Aliases: | Lztfl1, 5530402H04Rik, 6130400H19Rik, AI414725, AW048545 | ||
Description: | leucine zipper transcription factor-like 1 [Source:MGI Symbol;Acc:MGI:1934860] |
Percent Identity: | 81.16 % |
Parental protein coverage: | 68.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LKLQTDISELENRELLEQVAEFEKAEFVSSSKKPIIDITKPKLVPINEGGTTELLNKEILRLQQENEKLK |
LKL.T.ISEL.NR.LLEQVAEFE.AEF.S..K..IIDITKPKLVPI.EGGTTELL.KE.LRLQQ.NEKLK | |
Retrocopy | LKLHTGISEL*NRQLLEQVAEFERAEFAS*NKNSIIDITKPKLVPIKEGGTTELLSKENLRLQQDNEKLK |
Parental | S-RLKTIEIQAVNALDEKSKLERVLQDLQLDQENQQDLL-KAQDLDDLENTVATLRSEFQKTLNDKTENQ |
S.RLKT.E.QAVNALDEKSKLERVLQ.LQLDQENQ.D...KAQDLDDLENT..TLRSEFQKTLN.KTENQ | |
Retrocopy | S<RLKTTEMQAVNALDEKSKLERVLQVLQLDQENQKDFQ<KAQDLDDLENTLVTLRSEFQKTLNHKTENQ |
Parental | KSLEENLAAAKHDLLRVQEQLSMAEKELEKKFQQTAAYRNMKEILTK-KNDQIKDLRKRLAKYESED |
.SLEENLAAAKHDLLRV.EQLS.AEKELEKKFQQT..Y.N.KEILTK.KND..KDL.K.L.KY.SED | |
Retrocopy | NSLEENLAAAKHDLLRVKEQLSVAEKELEKKFQQTSSYGNRKEILTK<KNDLTKDLWKTLTKY*SED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .49 RPM |
SRP007412_heart | 0 .00 RPM | 9 .65 RPM |
SRP007412_kidney | 0 .02 RPM | 14 .23 RPM |
SRP007412_liver | 0 .00 RPM | 5 .05 RPM |
SRP007412_testis | 0 .09 RPM | 38 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003899 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013761 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010237 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025245 | 3 retrocopies |
retro_mmus_1834, retro_mmus_3266, retro_mmus_3276 ,
|
Procavia capensis | ENSPCAG00000009783 | 1 retrocopy |