RetrogeneDB ID: | retro_pcap_313 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_32079:14966..15326(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LZTFL1 | ||
Ensembl ID: | ENSPCAG00000009783 | ||
Aliases: | None | ||
Description: | leucine zipper transcription factor-like 1 [Source:HGNC Symbol;Acc:6741] |
Percent Identity: | 59.84 % |
Parental protein coverage: | 59.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VLLLRQLFSQAEKWYLKLQTDISEL-ENRELLEQVAEFEKAEFTSSNK-KPIADTVKPKLAPLNEGATAE |
VLL.RQLFS.A.KW.LK..TDIS...ENRELLEQVAEF.K..FT.S.K.K.I.DT.KP.L.PL....... | |
Retrocopy | VLLTRQLFSCAKKWCLKF*TDISAV>ENRELLEQVAEFKKV*FTPSDK<KTILDTIKPELVPLMGKENST |
Parental | LLNKEILRLQEENEKLKSR-LKTVEIQATNALDEKSKLERTLQDLQLDQGNE |
...KE.L.LQE.NEKLKS..LK.V..QATN...EKS..E..L..LQL.QGN. | |
Retrocopy | THVKETLSLQEDNEKLKSKLLKSVRVQATNSKGEKSEPEGALLELQLNQGNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003899 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013761 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000010237 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025245 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000009783 | 1 retrocopy |
retro_pcap_313 ,
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