RetrogeneDB ID: | retro_mmus_3285 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:63898263..63898802(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Arl1 | ||
Ensembl ID: | ENSMUSG00000060904 | ||
Aliases: | Arl1, 2310008D22Rik, AU019749 | ||
Description: | ADP-ribosylation factor-like 1 [Source:MGI Symbol;Acc:MGI:99436] |
Percent Identity: | 96.69 % |
Parental protein coverage: | 99.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQ-VWDLG |
MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEV.TTIPTIGFNVETVTYKNLKFQ..WDLG | |
Retrocopy | MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVITTIPTIGFNVETVTYKNLKFQ<IWDLG |
Parental | GQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEM |
GQTSIRPYWRCYYS.TDAVIYVVDSCD.DRIGISKSELVAMLEEEELRKAILV.FANKQDMEQAMTPSEM | |
Retrocopy | GQTSIRPYWRCYYSKTDAVIYVVDSCD*DRIGISKSELVAMLEEEELRKAILVMFANKQDMEQAMTPSEM |
Parental | ANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR |
ANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR | |
Retrocopy | ANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .19 RPM | 55 .39 RPM |
SRP007412_cerebellum | 0 .13 RPM | 44 .81 RPM |
SRP007412_heart | 0 .16 RPM | 44 .70 RPM |
SRP007412_kidney | 0 .19 RPM | 54 .75 RPM |
SRP007412_liver | 0 .08 RPM | 61 .66 RPM |
SRP007412_testis | 0 .09 RPM | 50 .77 RPM |