RetrogeneDB ID: | retro_ocun_847 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:81915939..81916508(-) | ||
Located in intron of: | ENSOCUG00000022598 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSOCUG00000002217 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 90.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ASTDRRFIMGGFFSSIFSSLFGTRE-MRILILGLDGAGK-TTILYRLQVGEVVTTIPTIGFNVETVTYKN |
ASTDRRF..GGFFSSIFSSLFGTRE.MRILILG.DGAGK..TILYRLQVGEVVTTIPT.G.NVETV.YKN | |
Retrocopy | ASTDRRFLIGGFFSSIFSSLFGTRE<MRILILGPDGAGKKNTILYRLQVGEVVTTIPTTGLNVETVMYKN |
Parental | LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM |
LKF.V.DLGGQ.SIRPYWRCYYSNTDAVIY.VDSCD..RIGISKSELVAMLEEEELRKAILVVFA.KQDM | |
Retrocopy | LKF*VQDLGGQASIRPYWRCYYSNTDAVIYAVDSCD*GRIGISKSELVAMLEEEELRKAILVVFAKKQDM |
Parental | EQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ |
EQAMTPSEMANSLGLPALK.RK.QIFKTSATKGTGLDEAMEWLVETLK.RQ | |
Retrocopy | EQAMTPSEMANSLGLPALKVRK*QIFKTSATKGTGLDEAMEWLVETLKRRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .99 RPM |
SRP017611_liver | 0 .00 RPM | 6 .55 RPM |