RetrogeneDB ID: | retro_mmus_383 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:161821862..161822402(+) | ||
Located in intron of: | ENSMUSG00000040297 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdk7 | ||
Ensembl ID: | ENSMUSG00000069089 | ||
Aliases: | Cdk7, AI323415, AI528512, C230069N13, Cdkn7, Crk4 | ||
Description: | cyclin-dependent kinase 7 [Source:MGI Symbol;Acc:MGI:102956] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 52.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVDVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS |
MAVDVKS.AKRYEKLDF.G.G.FAT.YKARDKNTNQIV.IKKIKLGHRSEAK.GINRTALREIKLLQ.LS | |
Retrocopy | MAVDVKSQAKRYEKLDFFGQGHFATAYKARDKNTNQIVTIKKIKLGHRSEAKGGINRTALREIKLLQKLS |
Parental | HPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKP |
HPN.IGLLD.FGHKSNISLV.D.METDLEVIIKDNSLVLTPSHI.AYMLM..QGLEYLHQHWILHRDLKP | |
Retrocopy | HPNTIGLLDTFGHKSNISLVLDVMETDLEVIIKDNSLVLTPSHIQAYMLMAFQGLEYLHQHWILHRDLKP |
Parental | NNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRA |
...LLD.NGVLKLADF.L.KSFGSP.R.YTHQVVTRWY.A | |
Retrocopy | KDFLLDKNGVLKLADFVLVKSFGSPSRTYTHQVVTRWYWA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .51 RPM | 49 .37 RPM |
SRP007412_cerebellum | 0 .26 RPM | 41 .25 RPM |
SRP007412_heart | 0 .06 RPM | 22 .66 RPM |
SRP007412_kidney | 0 .29 RPM | 28 .20 RPM |
SRP007412_liver | 0 .03 RPM | 15 .57 RPM |
SRP007412_testis | 0 .46 RPM | 16 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000134058 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013349 | 1 retrocopy | |
Mus musculus | ENSMUSG00000069089 | 1 retrocopy |
retro_mmus_383 ,
|
Otolemur garnettii | ENSOGAG00000010748 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002566 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015525 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016946 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012193 | 2 retrocopies |